DETONATE (DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation) consists of two component packages, RSEM-EVAL and REF-EVAL. Both packages are mainly intended to be used to evaluate de novo transcriptome assemblies, although REF-EVAL can be used to compare sets of any kinds of genomic sequences.



Usage on Bridges


To see what other modules are needed, what commands are available and how to get additional help type

module help detonate


To see what versions of DETONATE are available type

module avail detonate


To use DETONATE, include a command like this in your batch script or interactive session to load the DETONATE module:

module load detonate

Be sure you also load any other modules needed, as listed by the module help detonate command.