Anvi’o

ANVI’O

 

Anvi’o is an analysis and visualization platform for ‘omics data.

Documentation

• Anvi’o web site
• Citation:
  • Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. (2015) Anvi’o: an advanced analysis and visualization platform for ‘omics data. PeerJ 3:e1319
• Please consider also citing the following paper if you are using the pangenomics / metapangenomics workflow:
  • Delmont TO and Eren AM. (2018) Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ 6:e4320

 

Usage

To see what versions of Anvi’o are available type

module avail anvio

To see what other modules are needed, what commands are available and how to get additional help type

module help anvio

To use Anvi’o, include a command like this in your batch script or interactive session to load the Anvi’o module:

module load anvio

Be sure you also load any other modules needed, as listed by the module help anvio command.