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When are solar refrigerators less costly than on-grid refrigerators: A simulation modeling study Haidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Connor, Diana L.; Spiker, Marie; Lee, Bruce Y. Vaccine 17 35 0264410X 10.1016/j.vaccine.2016.11.103 http://linkinghub.elsevier.com/retrieve/pii/S0264410X17300555 4/1/2017
Geospatial Planning and the Resulting Economic Impact of Human Papillomavirus Vaccine Introduction in Mozambique: Haidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Portnoy, Allison; Lee, Bruce Y. Sexually Transmitted Diseases 4 44 0148-5717 10.1097/OLQ.0000000000000574 http://Insights.ovid.com/crossref?an=00007435-201704000-00006 4/1/2017
Map of different vaccine supply chain efficiency measures Haidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Lee, Bruce Y. Vaccine 1 35 0264410X 10.1016/j.vaccine.2016.11.025 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16310726 1/1/2017
The economic value of increasing geospatial access to tetanus toxoid immunization in Mozambique Haidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Lee, Bruce Y. Vaccine 35 34 0264410X 10.1016/j.vaccine.2016.06.065 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16305163 7/1/2016
The impact of implementing a demand forecasting system into a low-income country’s supply chain Mueller, Leslie E.; Haidari, Leila A.; Wateska, Angela R.; Phillips, Roslyn J.; Schmitz, Michelle M.; Connor, Diana L.; Norman, Bryan A.; Brown, Shawn T.; Welling, Joel S.; Lee, Bruce Y. Vaccine 32 34 0264410X 10.1016/j.vaccine.2016.05.027 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16303176 7/1/2016
Landscaping the structures of GAVI country vaccine supply chains and testing the effects of radical redesign Lee, Bruce Y.; Connor, Diana L.; Wateska, Angela R.; Norman, Bryan A.; Rajgopal, Jayant; Cakouros, Brigid E.; Chen, Sheng-I.; Claypool, Erin G.; Haidari, Leila A.; Karir, Veena; Leonard, Jim; Mueller, Leslie E.; Paul, Proma; Schmitz, Michelle M.; Welling, Joel S.; Weng, Yu-Ting; Brown, Shawn T. Vaccine 36 33 0264410X 10.1016/j.vaccine.2015.07.033 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15009792 8/1/2015
Modular vaccine packaging increases packing efficiency Norman, Bryan A.; Rajgopal, Jayant; Lim, Jung; Gorham, Katrin; Haidari, Leila; Brown, Shawn T.; Lee, Bruce Y. Vaccine 27 33 0264410X 10.1016/j.vaccine.2015.04.091 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15005770 6/1/2015
The Benin experience: How computational modeling can assist major vaccine policy changes in low and middle income countries Lee, Bruce Y.; Schreiber, Benjamin; Wateska, Angela R.; Connor, Diana L.; Dicko, Hamadou M.; Jaillard, Philippe; Mvundura, Mercy; Levin, Carol; Avella, Mélanie; Haidari, Leila A.; Brown, Shawn T. Vaccine 25 33 0264410X 10.1016/j.vaccine.2015.04.022 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15004752 6/1/2015
One size does not fit all: The impact of primary vaccine container size on vaccine distribution and delivery Haidari, Leila A.; Wahl, Brian; Brown, Shawn T.; Privor-Dumm, Lois; Wallman-Stokes, Cecily; Gorham, Katie; Connor, Diana L.; Wateska, Angela R.; Schreiber, Benjamin; Dicko, Hamadou; Jaillard, Philippe; Avella, Melanie; Lee, Bruce Y. Vaccine 28 33 0264410X 10.1016/j.vaccine.2015.04.018 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15004715 6/1/2015
Costs of vaccine programs across 94 low- and middle-income countries Portnoy, Allison; Ozawa, Sachiko; Grewal, Simrun; Norman, Bryan A.; Rajgopal, Jayant; Gorham, Katrin M.; Haidari, Leila A.; Brown, Shawn T.; Lee, Bruce Y. Vaccine   33 0264410X 10.1016/j.vaccine.2014.12.037 http://linkinghub.elsevier.com/retrieve/pii/S0264410X14016909 5/1/2015
Augmenting Transport versus Increasing Cold Storage to Improve Vaccine Supply Chains Haidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Chen, Sheng-I; Lee, Bruce Y. PLoS ONE 5 8 1932-6203 10.1371/journal.pone.0064303 http://dx.plos.org/10.1371/journal.pone.0064303 5/22/2013
Only Adding Stationary Storage to Vaccine Supply Chains May Create and Worsen Transport Bottlenecks: Haidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Claypool, Erin G.; Weng, Yu-Ting; Chen, Sheng-I; Lee, Bruce Y. Journal of Public Health Management and Practice   19 1078-4659 10.1097/PHH.0b013e31828a83fe http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:landingpage&an=00124784-201309001-00015 2013
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Spectral density analysis of the chiral transition in nf=4 finite temperature QCD Alves, Nelson A.; Berg, Bernd A.; Duke, Dennis W.; Irbäck, Anders; Sanielevici, Sergiu Physics Letters B 3/4/2017 280 3702693 10.1016/0370-2693(92)90064-B http://linkinghub.elsevier.com/retrieve/pii/037026939290064B 4/1/1992
Finite-temperature chiral transition in real-world QCD? Sanielevici, S. Nuclear Physics B – Proceedings Supplements   4 9205632 10.1016/0920-5632(88)90120-X http://linkinghub.elsevier.com/retrieve/pii/092056328890120X 4/1/1988
Remarks on the numerical solution of Langevin equations on unitary groups spaces Gausterer, H.; Sanielevici, S. Computer Physics Communications 1 52 104655 10.1016/0010-4655(88)90170-1 http://linkinghub.elsevier.com/retrieve/pii/0010465588901701 12/1/1988
Finite temperature QCD with low mass dynamical quarks Gavai, R.V.; Potvin, J.; Sanielevici, S. Nuclear Physics B – Proceedings Supplements   4 9205632 10.1016/0920-5632(88)90112-0 http://linkinghub.elsevier.com/retrieve/pii/0920563288901120 4/1/1988
Development of a minature pCO2 electrode for biomedical applications Lai, N. C.; Liu, C. C.; Brown, E. G.; Neuman, M. R.; Ko, W. H. Medical & Biological Engineering 6 13 0025-696X     11/1/1975
NCBI-BLAST programs optimization on XSEDE resources for sustainable aquaculture Seetharam, Arun; Gomez, Antonio; Purcell, Catherine M.; Hyde, John R.; Blood, Philip D.; Severin, Andrew J.         10.1145/2792745.2792749 http://dl.acm.org/citation.cfm?doid=2792745.2792749 2015
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture Ghaffari, Noushin; Sanchez-Flores, Alejandro; Doan, Ryan; Garcia-Orozco, Karina D.; Chen, Patricia L.; Ochoa-Leyva, Adrian; Lopez-Zavala, Alonso A.; Carrasco, J. Salvador; Hong, Chris; Brieba, Luis G.; Rudiño-Piñera, Enrique; Blood, Philip D.; Sawyer, Jason E.; Johnson, Charles D.; Dindot, Scott V.; Sotelo-Mundo, Rogerio R.; Criscitiello, Michael F. Scientific Reports   4 2045-2322 10.1038/srep07081   11/25/2014
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight Blood, Philip D.; Marcus, Shoshana; Schatz, Michael C.         10.1145/2616498.2616502 http://dl.acm.org/citation.cfm?doid=2616498.2616502 2014
Leveraging the national cyberinfrastructure for biomedical research LeDuc, Richard; Vaughn, Matthew; Fonner, John M; Sullivan, Michael; Williams, James G; Blood, Philip D; Taylor, James; Barnett, William Journal of the American Medical Informatics Association 2 21 1067-5027, 1527-974X 10.1136/amiajnl-2013-002059 https://academic.oup.com/jamia/article-lookup/doi/10.1136/amiajnl-2013-002059 3/1/2014
Enabling large-scale next-generation sequence assembly with Blacklight Couger, M. Brian; Pipes, Lenore; Squina, Fabio; Prade, Rolf; Siepel, Adam; Palermo, Robert; Katze, Michael G.; Mason, Christopher E.; Blood, Philip D. Concurrency and Computation: Practice & Experience 13 26 1532-0626 10.1002/cpe.3231   9/10/2014
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis Haas, Brian J.; Papanicolaou, Alexie; Yassour, Moran; Grabherr, Manfred; Blood, Philip D.; Bowden, Joshua; Couger, Matthew Brian; Eccles, David; Li, Bo; Lieber, Matthias; Macmanes, Matthew D.; Ott, Michael; Orvis, Joshua; Pochet, Nathalie; Strozzi, Francesco; Weeks, Nathan; Westerman, Rick; William, Thomas; Dewey, Colin N.; Henschel, Robert; Leduc, Richard D.; Friedman, Nir; Regev, Aviv Nature Protocols 8 8 1750-2799 10.1038/nprot.2013.084   8/1/2013
The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics Pipes, Lenore; Li, Sheng; Bozinoski, Marjan; Palermo, Robert; Peng, Xinxia; Blood, Phillip; Kelly, Sara; Weiss, Jeffrey M.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Zumbo, Paul; Chen, Ronghua; Schroth, Gary P.; Mason, Christopher E.; Katze, Michael G. Nucleic Acids Research Database issue 41 1362-4962 10.1093/nar/gks1268   1/1/2013
Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations Peng, Yuxing; Crosby, Lonnie; Knight, Chris; Voth, Gregory A.; Blood, Philip         10.1145/2335755.2335833 http://dl.acm.org/citation.cfm?doid=2335755.2335833 2012
Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics Liwo, Adam; O?dziej, Stanis?aw; Czaplewski, Cezary; Kleinerman, Dana S.; Blood, Philip; Scheraga, Harold A. Journal of Chemical Theory and Computation 3 6 1549-9626 10.1021/ct9004068   3/9/2010
Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations Blood, Philip D.; Swenson, Richard D.; Voth, Gregory A. Biophysical Journal 4 95 1542-0086 10.1529/biophysj.107.121160   8/1/2008
Probing the molecular-scale lipid bilayer response to shear flow using nonequilibrium molecular dynamics Blood, Philip D.; Ayton, Gary S.; Voth, Gregory A. The Journal of Physical Chemistry. B 39 109 1520-6106 10.1021/jp0530449   10/6/2005
Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations Blood, Philip D.; Voth, Gregory A. Proceedings of the National Academy of Sciences of the United States of America 41 103 0027-8424 10.1073/pnas.0603917103   10/10/2006
Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation Ayton, Gary S.; Blood, Philip D.; Voth, Gregory A. Biophysical Journal 10 92 0006-3495 10.1529/biophysj.106.101709   5/15/2007
Implications of the topological properties of Internet traffic on traffic engineering Uhlig, Steve; Bonaventure, Oliver; Magnin, Vincent; Rapier, Chris; Deri, Luca         10.1145/967900.967974 http://portal.acm.org/citation.cfm?doid=967900.967974 2004
TCGA Expedition: A Data Acquisition and Management System for TCGA Data Chandran, Uma R.; Medvedeva, Olga P.; Barmada, M. Michael; Blood, Philip D.; Chakka, Anish; Luthra, Soumya; Ferreira, Antonio; Wong, Kim F.; Lee, Adrian V.; Zhang, Zhihui; Budden, Robert; Scott, J. Ray; Berndt, Annerose; Berg, Jeremy M.; Jacobson, Rebecca S. PLOS ONE 10 11 1932-6203 10.1371/journal.pone.0165395 http://dx.plos.org/10.1371/journal.pone.0165395 10/27/2016
The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus Morgan, Josh Lyskowski; Berger, Daniel Raimund; Wetzel, Arthur Willis; Lichtman, Jeff William Cell 1 165 928674 10.1016/j.cell.2016.02.033 http://linkinghub.elsevier.com/retrieve/pii/S0092867416301350 3/1/2016
Network anatomy and in vivo physiology of visual cortical neurons Bock, Davi D.; Lee, Wei-Chung Allen; Kerlin, Aaron M.; Andermann, Mark L.; Hood, Greg; Wetzel, Arthur W.; Yurgenson, Sergey; Soucy, Edward R.; Kim, Hyon Suk; Reid, R. Clay Nature 7337 471 0028-0836, 1476-4687 10.1038/nature09802 http://www.nature.com/doifinder/10.1038/nature09802 3/10/2011
High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing Zhang, Xiaofeng; Badea, Cristian; Hood, Greg; Wetzel, Arthur; Qi, Yi; Stiles, Joel; Johnson, G. Allan Biomedical Optics Express 9 2 2156-7085, 2156-7085 10.1364/BOE.2.002449 https://www.osapublishing.org/boe/abstract.cfm?uri=boe-2-9-2449 9/1/2011
Factors Influencing the Emergence and Spread of HIV Drug Resistance Arising from Rollout of Antiretroviral Pre-Exposure Prophylaxis (PrEP) Abbas, Ume L.; Hood, Gregory; Wetzel, Arthur W.; Mellors, John W. PLoS ONE 4 6 1932-6203 10.1371/journal.pone.0018165 http://dx.plos.org/10.1371/journal.pone.0018165 4/15/2011
Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT Zhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. Allan Proceedings of SPIE–the International Society for Optical Engineering 775706 7757 0277-786X 10.1117/12.841891   2010
Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agent Badea, Cristian T.; Wetzel, Arthur W.; Mistry, Nilesh; Pomerantz, Stuart; Nave, Demian; Johnson, G. Allan Computerized Medical Imaging and Graphics: The Official Journal of the Computerized Medical Imaging Society 3 32 0895-6111 10.1016/j.compmedimag.2007.12.004   4/1/2008
Design and analysis of a content-based pathology image retrieval system Zheng, Lei; Wetzel, Arthur W.; Gilbertson, John; Becich, Michael J. IEEE transactions on information technology in biomedicine: a publication of the IEEE Engineering in Medicine and Biology Society 4 7 1089-7771     12/1/2003
High-entropy alloys: fundamentals and applications               2016
Contemporary high performance computing: from petascale toward exascale Blood, Philip             2015