PSC Publications

by | Jun 14, 2017 | PSC Staff Publications

Title Author Publication Title Issue Volume ISSN DOI Url Date
When are solar refrigerators less costly than on-grid refrigerators: A simulation modeling study Haidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Connor, Diana L.; Spiker, Marie; Lee, Bruce Y. Vaccine 17 35 0264410X 10.1016/j.vaccine.2016.11.103 http://linkinghub.elsevier.com/retrieve/pii/S0264410X17300555 4/1/2017
Geospatial Planning and the Resulting Economic Impact of Human Papillomavirus Vaccine Introduction in Mozambique: Haidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Portnoy, Allison; Lee, Bruce Y. Sexually Transmitted Diseases 4 44 0148-5717 10.1097/OLQ.0000000000000574 http://Insights.ovid.com/crossref?an=00007435-201704000-00006 4/1/2017
Map of different vaccine supply chain efficiency measures Haidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Lee, Bruce Y. Vaccine 1 35 0264410X 10.1016/j.vaccine.2016.11.025 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16310726 1/1/2017
The economic value of increasing geospatial access to tetanus toxoid immunization in Mozambique Haidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Lee, Bruce Y. Vaccine 35 34 0264410X 10.1016/j.vaccine.2016.06.065 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16305163 7/1/2016
The impact of implementing a demand forecasting system into a low-income country’s supply chain Mueller, Leslie E.; Haidari, Leila A.; Wateska, Angela R.; Phillips, Roslyn J.; Schmitz, Michelle M.; Connor, Diana L.; Norman, Bryan A.; Brown, Shawn T.; Welling, Joel S.; Lee, Bruce Y. Vaccine 32 34 0264410X 10.1016/j.vaccine.2016.05.027 http://linkinghub.elsevier.com/retrieve/pii/S0264410X16303176 7/1/2016
Landscaping the structures of GAVI country vaccine supply chains and testing the effects of radical redesign Lee, Bruce Y.; Connor, Diana L.; Wateska, Angela R.; Norman, Bryan A.; Rajgopal, Jayant; Cakouros, Brigid E.; Chen, Sheng-I.; Claypool, Erin G.; Haidari, Leila A.; Karir, Veena; Leonard, Jim; Mueller, Leslie E.; Paul, Proma; Schmitz, Michelle M.; Welling, Joel S.; Weng, Yu-Ting; Brown, Shawn T. Vaccine 36 33 0264410X 10.1016/j.vaccine.2015.07.033 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15009792 8/1/2015
Modular vaccine packaging increases packing efficiency Norman, Bryan A.; Rajgopal, Jayant; Lim, Jung; Gorham, Katrin; Haidari, Leila; Brown, Shawn T.; Lee, Bruce Y. Vaccine 27 33 0264410X 10.1016/j.vaccine.2015.04.091 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15005770 6/1/2015
The Benin experience: How computational modeling can assist major vaccine policy changes in low and middle income countries Lee, Bruce Y.; Schreiber, Benjamin; Wateska, Angela R.; Connor, Diana L.; Dicko, Hamadou M.; Jaillard, Philippe; Mvundura, Mercy; Levin, Carol; Avella, Mélanie; Haidari, Leila A.; Brown, Shawn T. Vaccine 25 33 0264410X 10.1016/j.vaccine.2015.04.022 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15004752 6/1/2015
One size does not fit all: The impact of primary vaccine container size on vaccine distribution and delivery Haidari, Leila A.; Wahl, Brian; Brown, Shawn T.; Privor-Dumm, Lois; Wallman-Stokes, Cecily; Gorham, Katie; Connor, Diana L.; Wateska, Angela R.; Schreiber, Benjamin; Dicko, Hamadou; Jaillard, Philippe; Avella, Melanie; Lee, Bruce Y. Vaccine 28 33 0264410X 10.1016/j.vaccine.2015.04.018 http://linkinghub.elsevier.com/retrieve/pii/S0264410X15004715 6/1/2015
Costs of vaccine programs across 94 low- and middle-income countries Portnoy, Allison; Ozawa, Sachiko; Grewal, Simrun; Norman, Bryan A.; Rajgopal, Jayant; Gorham, Katrin M.; Haidari, Leila A.; Brown, Shawn T.; Lee, Bruce Y. Vaccine   33 0264410X 10.1016/j.vaccine.2014.12.037 http://linkinghub.elsevier.com/retrieve/pii/S0264410X14016909 5/1/2015
Augmenting Transport versus Increasing Cold Storage to Improve Vaccine Supply Chains Haidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Chen, Sheng-I; Lee, Bruce Y. PLoS ONE 5 8 1932-6203 10.1371/journal.pone.0064303 http://dx.plos.org/10.1371/journal.pone.0064303 5/22/2013
Only Adding Stationary Storage to Vaccine Supply Chains May Create and Worsen Transport Bottlenecks: Haidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Claypool, Erin G.; Weng, Yu-Ting; Chen, Sheng-I; Lee, Bruce Y. Journal of Public Health Management and Practice   19 1078-4659 10.1097/PHH.0b013e31828a83fe http://content.wkhealth.com/linkback/openurl?sid=WKPTLP:landingpage&an=00124784-201309001-00015 2013
Temperature dependence of the 19F transferred hyperfine interaction in the EPR of Mn2+:PbF2 Madrid, null; King, null; Jaccarino, null Physical Review. B, Condensed Matter 9 31 0163-1829     5/1/1985
High-field 19F NMR relaxation studies in the superionic conductor Mn:PbF2 Madrid, null; King, null; Jaccarino, null Physical Review. B, Condensed Matter 5 32 0163-1829     9/1/1985
The structure of proteins and their binding sites: NMR and artificial intelligence Jardetzky, O.; Lichtarge, O.; Brinkley, J.; Madrid, M. Progress in Clinical and Biological Research   289 0361-7742     1989
Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domain Constantine, K. L.; Madrid, M.; Bányai, L.; Trexler, M.; Patthy, L.; Llinás, M. Journal of Molecular Biology 1 223 0022-2836     1/5/1992
Restoring allosterism with compensatory mutations in hemoglobin Kim, H. W.; Shen, T. J.; Sun, D. P.; Ho, N. T.; Madrid, M.; Tam, M. F.; Zou, M.; Cottam, P. F.; Ho, C. Proceedings of the National Academy of Sciences of the United States of America 24 91 0027-8424     11/22/1994
A novel low oxygen affinity recombinant hemoglobin (alpha96val–> Trp): switching quaternary structure without changing the ligation state Kim, H. W.; Shen, T. J.; Sun, D. P.; Ho, N. T.; Madrid, M.; Ho, C. Journal of Molecular Biology 4 248 0022-2836 10.1006/jmbi.1995.0267   5/12/1995
XSEDE Training: Achieving Access and Inclusion Akli, Linda; Alameda, Jay; Gordon, Steven I.; Madrid, Marcela; Rivera, Lorna         10.1145/2949550.2949586 http://dl.acm.org/citation.cfm?doid=2949550.2949586 2016
Evaluation and synthesis of AZT prodrugs with optimized chemical stabilities: experimental and theoretical analyses Ribone, Sergio R.; Schenfeld, Esteban M.; Madrid, Marcela; Pierini, Adriana B.; Quevedo, Mario A. New J. Chem. 3 40 1144-0546, 1369-9261 10.1039/C5NJ03002A http://xlink.rsc.org/?DOI=C5NJ03002A 2016
Synthesis, biological evaluation and molecular modeling of 4,6-diarylpyrimidines and diarylbenzenes as novel non-nucleosides HIV-1 reverse transcriptase inhibitors Ribone, Sergio R.; Leen, Volker; Madrid, Marcela; Dehaen, Wim; Daelemans, Dirk; Pannecouque, Christophe; Briñón, Margarita C. European Journal of Medicinal Chemistry   58 2235234 10.1016/j.ejmech.2012.10.036 http://linkinghub.elsevier.com/retrieve/pii/S022352341200640X 12/1/2012
Effect of Backbone Flexibility on Charge Transfer Rates in Peptide Nucleic Acid Duplexes Wierzbinski, Emil; de Leon, Arnie; Yin, Xing; Balaeff, Alexander; Davis, Kathryn L.; Reppireddy, Srinivas; Venkatramani, Ravindra; Keinan, Shahar; Ly, Danith H.; Madrid, Marcela; Beratan, David N.; Achim, Catalina; Waldeck, David H. Journal of the American Chemical Society 22 134 0002-7863, 1520-5126 10.1021/ja301677z http://pubs.acs.org/doi/abs/10.1021/ja301677z 6/6/2012
Rational Approaches for the Design of Effective Human Immunodeficiency Virus Type 1 Nonnucleoside Reverse Transcriptase Inhibitors Ribone, Sergio R.; Quevedo, Mario A.; Madrid, Marcela; Briñón, Margarita C. Journal of Chemical Information and Modeling 1 51 1549-9596, 1549-960X 10.1021/ci1001636 http://pubs.acs.org/doi/abs/10.1021/ci1001636 1/24/2011
The structure of a ?-modified peptide nucleic acid duplex He, Wei; Crawford, Matthew J.; Rapireddy, Srinivas; Madrid, Marcela; Gil, Roberto R.; Ly, Danith H.; Achim, Catalina Molecular BioSystems 9 6 1742-206X, 1742-2051 10.1039/c002254c http://xlink.rsc.org/?DOI=c002254c 2010
Crystal Structure of Chiral ?PNA with Complementary DNA Strand: Insights into the Stability and Specificity of Recognition and Conformational Preorganization Yeh, Joanne I.; Shivachev, Boris; Rapireddy, Srinivas; Crawford, Matthew J.; Gil, Roberto R.; Du, Shoucheng; Madrid, Marcela; Ly, Danith H. Journal of the American Chemical Society 31 132 0002-7863, 1520-5126 10.1021/ja907225d http://pubs.acs.org/doi/abs/10.1021/ja907225d 8/11/2010
Side effects of colaspase Summerfield, G.; Swirsky, D. British Medical Journal 6148 2 0007-1447     11/11/1978
Solution Structure of a Peptide Nucleic Acid Duplex from NMR Data: Features and Limitations He, Wei; Hatcher, Elizabeth; Balaeff, Alexander; Beratan, David N.; Gil, Roberto R.; Madrid, Marcela; Achim, Catalina Journal of the American Chemical Society 40 130 0002-7863, 1520-5126 10.1021/ja800652h http://pubs.acs.org/doi/abs/10.1021/ja800652h 10/8/2008
Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT Zhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. Allan Proceedings of SPIE–the International Society for Optical Engineering 775706 7757 0277-786X 10.1117/12.841891   2010
Network anatomy and in vivo physiology of visual cortical neurons Bock, Davi D.; Lee, Wei-Chung Allen; Kerlin, Aaron M.; Andermann, Mark L.; Hood, Greg; Wetzel, Arthur W.; Yurgenson, Sergey; Soucy, Edward R.; Kim, Hyon Suk; Reid, R. Clay Nature 7337 471 1476-4687 10.1038/nature09802   3/10/2011
Factors influencing the emergence and spread of HIV drug resistance arising from rollout of antiretroviral pre-exposure prophylaxis (PrEP) Abbas, Ume L.; Hood, Gregory; Wetzel, Arthur W.; Mellors, John W. PloS One 4 6 1932-6203 10.1371/journal.pone.0018165   4/15/2011
High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing Zhang, Xiaofeng; Badea, Cristian; Hood, Greg; Wetzel, Arthur; Qi, Yi; Stiles, Joel; Johnson, G. Allan Biomedical Optics Express 9 2 2156-7085 10.1364/BOE.2.002449   9/1/2011
Antiretroviral therapy and pre-exposure prophylaxis: combined impact on HIV transmission and drug resistance in South Africa Abbas, Ume L.; Glaubius, Robert; Mubayi, Anuj; Hood, Gregory; Mellors, John W. The Journal of Infectious Diseases 2 208 1537-6613 10.1093/infdis/jit150   7/15/2013
Antiretroviral treatment, preexposure prophylaxis, and drug resistance in sub-Saharan Africa: a consensus among mathematical models Abbas, Ume L.; Glaubius, Robert; Hood, Gregory; Mellors, John W. The Journal of Infectious Diseases 1 209 1537-6613 10.1093/infdis/jit545   1/1/2014
Anatomy and function of an excitatory network in the visual cortex Lee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael; Graham, Brett J.; Hood, Greg; Glattfelder, Katie; Reid, R. Clay Nature 7599 532 1476-4687 10.1038/nature17192   4/21/2016
Cost-effectiveness of Injectable Preexposure Prophylaxis for HIV Prevention in South Africa Glaubius, Robert L.; Hood, Greg; Penrose, Kerri J.; Parikh, Urvi M.; Mellors, John W.; Bendavid, Eran; Abbas, Ume L. Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America 4 63 1537-6591 10.1093/cid/ciw321   8/15/2016
Interferon suppresses glutamine synthetase induction in chick embryonic neural retina Matsuno, T.; Shirasawa, N.; Kohno, S. Biochemical and Biophysical Research Communications 1 70 0006-291X     5/3/1976
Effectors of Visual Search Efficacy on the Allegheny Plateau Chiacchia, Kenneth B.; Houlahan, Heather E. Wilderness & Environmental Medicine 3 21 10806032 10.1016/j.wem.2010.06.002 http://linkinghub.elsevier.com/retrieve/pii/S1080603210001961 9/1/2010
Deriving Effective Sweep Width for Air-scent Dog Teams Chiacchia, Kenneth B.; Houlahan, Heather E.; Hostetter, Rebecca S. Wilderness & Environmental Medicine 2 26 10806032 10.1016/j.wem.2014.10.004 http://linkinghub.elsevier.com/retrieve/pii/S1080603214003202 6/1/2015
Use of the Visual Range of Detection to Estimate Effective Sweep Width for Land Search and Rescue Based On 10 Detection Experiments in North America Koester, Robert J.; Chiacchia, Kenneth B.; Twardy, Charles R.; Cooper, Donald C.; Frost, John R.; Robe, R. Quincy Wilderness & Environmental Medicine 2 25 10806032 10.1016/j.wem.2013.09.016 http://linkinghub.elsevier.com/retrieve/pii/S1080603213002664 6/1/2014
Quantitation of the class I disulfides of the insulin receptor Chiacchia, Kenneth B. Biochemical and Biophysical Research Communications 3 176 0006291X 10.1016/0006-291X(91)90409-Z http://linkinghub.elsevier.com/retrieve/pii/0006291X9190409Z 5/1/1991
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Reoxidation of the class I disulfides of the rat adipocyte insulin receptor is dependent upon the presence of insulin: the class I disulfide of the insulin receptor is extracellular Chiacchia, Kenneth B. Biochemistry 13 27 0006-2960, 1520-4995 10.1021/bi00413a046 http://pubs.acs.org/doi/abs/10.1021/bi00413a046 6/1/1988
A sustainable national gateway for biological computation Taylor, James; Budden, Robert; Nekrutenko, Anton; Coraor, Nate; Blood, Philip D.; Ropelewski, Alex; Zhang, Zhihui; Palencia, Josephine; Sanielevici, Sergiu; Yanovich, Jared         10.1145/2484762.2484817 http://dl.acm.org/citation.cfm?doid=2484762.2484817 2013
The data supercell Nowoczynski, Paul; Sommerfield, Jason; Yanovich, Jared; Scott, J. Ray; Zhang, Zhihui; Levine, Michael         10.1145/2335755.2335805 http://dl.acm.org/citation.cfm?doid=2335755.2335805 2012
hFS: a hybrid file system prototype for improving small file and metadata performance Zhang, Zhihui; Ghose, Kanad ACM SIGOPS Operating Systems Review 3 41 1635980 10.1145/1272998.1273016 http://portal.acm.org/citation.cfm?doid=1272998.1273016 6/1/2007
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Digitoxin metabolism by rat liver microsomes Schmoldt, A.; Benthe, H. F.; Haberland, G. Biochemical Pharmacology 17 24 1873-2968     9/1/1975
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Bridges: a uniquely flexible HPC resource for new communities and data analytics Nystrom, Nicholas A.; Levine, Michael J.; Roskies, Ralph Z.; Scott, J. Ray         10.1145/2792745.2792775 http://dl.acm.org/citation.cfm?doid=2792745.2792775 2015
Bridges: a uniquely flexible HPC resource for new communities and data analytics Nystrom, Nicholas A.; Levine, Michael J.; Roskies, Ralph Z.; Scott, J. Ray         10.1145/2792745.2792775 http://dl.acm.org/citation.cfm?doid=2792745.2792775 2015
An ab initio investgation of ideal tensile and shear strength of TiVNbMo high-entropy alloy Tian, Fuyang; Wang, Dongping; Shen, Jiang; Wang, Yang Materials Letters   166 0167577X 10.1016/j.matlet.2015.12.064 http://linkinghub.elsevier.com/retrieve/pii/S0167577X1531017X 3/1/2016
A full-potential approach to the relativistic single-site Green’s function Liu, Xianglin; Wang, Yang; Eisenbach, Markus; Malcolm Stocks, G Journal of Physics: Condensed Matter 35 28 0953-8984, 1361-648X 10.1088/0953-8984/28/35/355501 http://stacks.iop.org/0953-8984/28/i=35/a=355501?key=crossref.ca2dfb5a2e5eec4d5273ba80dde84ac4 9/7/2016
Beyond Atomic Sizes and Hume-Rothery Rules: Understanding and Predicting High-Entropy Alloys Troparevsky, M. Claudia; Morris, James R.; Daene, Markus; Wang, Yang; Lupini, Andrew R.; Stocks, G. Malcolm JOM 10 67 1047-4838, 1543-1851 10.1007/s11837-015-1594-2 http://link.springer.com/10.1007/s11837-015-1594-2 10/1/2015
The single-site Green’s function and Krein’s theorem Wang, Yang; Stocks, G Malcolm; Faulkner, J S Journal of Physics: Condensed Matter 27 26 0953-8984, 1361-648X 10.1088/0953-8984/26/27/274208 http://stacks.iop.org/0953-8984/26/i=27/a=274208?key=crossref.fa2806982f678cfe50ad26dd66b36a85 7/9/2014
Green’s functions in full-potential multiple-scattering theory Rusanu, A.; Stocks, G. M.; Wang, Y.; Faulkner, J. S. Physical Review B 3 84 1098-0121, 1550-235X 10.1103/PhysRevB.84.035102 https://link.aps.org/doi/10.1103/PhysRevB.84.035102 7/13/2011
Calculated electronic and magnetic structure of screw dislocations in alpha iron Odbadrakh, K.; Rusanu, A.; Stocks, G. M.; Samolyuk, G. D.; Eisenbach, M.; Wang, Yang; Nicholson, D. M. Journal of Applied Physics 7 109 0021-8979, 1089-7550 10.1063/1.3562217 http://aip.scitation.org/doi/10.1063/1.3562217 4/1/2011
A study of radiation damage effects on the magnetic structure of bulk Iron Wang, Yang; Nicholson, D. M. C.; Stocks, G. M.; Rusanu, Aurelian; Eisenbach, Markus; Stoller, R. E. Journal of Applied Physics 7 109 0021-8979, 1089-7550 10.1063/1.3553937 http://aip.scitation.org/doi/10.1063/1.3553937 4/1/2011
A Theoretical Study of the Magnetic Structure of Bulk Iron with Radiation Defects Wang, Yang; Nicholson, D.M.C.; Stocks, G.M.; Rusanu, Aurelian; Eisenbach, Markus; Stoller, R. E. MRS Proceedings   1363 1946-4274 10.1557/opl.2011.1283 http://journals.cambridge.org/abstract_S1946427411012838 1/1/2011
Charge Distributions in Metallic Alloys: A Charge-Excess Functional Theory Approach Bruno, Ezio; Zingales, Leon; Wang, Yang Physical Review Letters 16 91 0031-9007, 1079-7114 10.1103/PhysRevLett.91.166401 https://link.aps.org/doi/10.1103/PhysRevLett.91.166401 10/14/2003
Electronic and Magnetic Structure of ${\rm L}1_{0}$-FePt Nanoparticle Embedded in FePt Random Alloy Wang, Yang; Stocks, G. M.; Rusanu, Aurelian; Nicholson, D. M. C.; Eisenbach, Markus; Zhang, Qiming; Liu, J. P. IEEE Transactions on Magnetics 6 43 0018-9464 10.1109/TMAG.2007.893856 http://ieeexplore.ieee.org/document/4202986/ 6/1/2007
The first principles O[N] LSMS method and its applications to magnetic structure of alloys Wang, Y.; Stocks, G.M.; Nicholson, D.M.C.; Shelton, W.A. Computers & Mathematics with Applications 7 35 8981221 10.1016/S0898-1221(98)00035-2 http://linkinghub.elsevier.com/retrieve/pii/S0898122198000352 4/1/1998
Coulomb energies in alloys Faulkner, J. S.; Wang, Yang; Stocks, G. M. Physical Review B 12 55 0163-1829, 1095-3795 10.1103/PhysRevB.55.7492 https://link.aps.org/doi/10.1103/PhysRevB.55.7492 3/15/1997
Core Level Chemical Shifts in Metallic Alloys Faulkner, J. S.; Wang, Yang; Stocks, G. M. Physical Review Letters 9 81 0031-9007, 1079-7114 10.1103/PhysRevLett.81.1905 https://link.aps.org/doi/10.1103/PhysRevLett.81.1905 8/31/1998
Noncollinear magnetic structure in Ni0.35Fe0.65 Wang, Yang; Stocks, G. M.; Nicholson, D. M. C.; Shelton, W. A.; Antropov, V. P.; Harmon, B. N. Journal of Applied Physics 8 81 0021-8979, 1089-7550 10.1063/1.364740 http://aip.scitation.org/doi/10.1063/1.364740 4/15/1997
Impact of Short-Range Forces on Defect Production from High-Energy Collisions Stoller, R. E.; Tamm, A.; Béland, L. K.; Samolyuk, G. D.; Stocks, G. M.; Caro, A.; Slipchenko, L. V.; Osetsky, Yu. N.; Aabloo, A.; Klintenberg, M.; Wang, Y. Journal of Chemical Theory and Computation 6 12 1549-9618, 1549-9626 10.1021/acs.jctc.5b01194 http://pubs.acs.org/doi/abs/10.1021/acs.jctc.5b01194 6/14/2016
A sustainable national gateway for biological computation Taylor, James; Budden, Robert; Nekrutenko, Anton; Coraor, Nate; Blood, Philip D.; Ropelewski, Alex; Zhang, Zhihui; Palencia, Josephine; Sanielevici, Sergiu; Yanovich, Jared         10.1145/2484762.2484817 http://dl.acm.org/citation.cfm?doid=2484762.2484817 2013
Spectral density study of the SU(3) deconfining phase transition Alves, Nelson A.; Berg, Bernd A.; Sanielevici, Sergiu Nuclear Physics B 1 376 5503213 10.1016/0550-3213(92)90075-M http://linkinghub.elsevier.com/retrieve/pii/055032139290075M 6/1/1992
Can the chiral transition in QCD be described by a linear sigma-model in three dimensions? Gausterer, H.; Sanielevici, S. Physics Letters B 4 209 3702693 10.1016/0370-2693(88)91188-4 http://linkinghub.elsevier.com/retrieve/pii/0370269388911884 8/1/1988
PHYSICS GOALS OF THE QCD TERAFLOP PROJECT Aoki, Sinya; Shrock, Robert; Berg, Bernd; Bernard, Claude; Ogilvie, Michael; Petcher, Don; Bhanot, Gyan; Rossi, Pietro; Bitar, Khalil; Edwards, Robert; Heller, Urs M.; Kennedy, Anthony; Sanielevici, Sergio; Brower, Richard; Potvin, Jean; Rebbi, Claudio; Brown, Frank R.; Christ, Norman; Mawhinney, Robert; Detar, Carleton; Draper, Terrence; Liu, Keh-Fei; Gottlieb, Steve; Hamber, Herbert; Kilcup, Greg; Shigemitsu, Junko; Kogut, John; Kronfeld, Andreas; Lee, I-Hsiu; Negele, John; Ohta, Shigemi; Sexton, James C.; Shuryak, Edward; Sinclair, D.K.; Soni, Amarjit; Wilcox, Walter International Journal of Modern Physics C 4 2 0129-1831, 1793-6586 10.1142/S0129183191001049 http://www.worldscientific.com/doi/abs/10.1142/S0129183191001049 12/1/1991
Distributed, on-demand, data-intensive and collaborative simulation analysis Breckenridge, Arthurine; Pierson, Lyndon; Sanielevici, Sergiu; Welling, Joel; Keller, Rainer; Woessner, Uwe; Schulze, Juergen Future Generation Computer Systems 6 19 0167739X 10.1016/S0167-739X(03)00065-7 http://linkinghub.elsevier.com/retrieve/pii/S0167739X03000657 8/1/2003
On the chiral phase transition in two-flavor lattice QCD Gavai, R.V.; Potvin, J.; Sanielevici, S. Physics Letters B 1/2/2017 200 3702693 10.1016/0370-2693(88)91125-2 http://linkinghub.elsevier.com/retrieve/pii/0370269388911252 1/1/1988
On the chiral phase transition in two-flavor lattice QCD Gavai, R.V.; Potvin, J.; Sanielevici, S. Physics Letters B 1/2/2017 200 3702693 10.1016/0370-2693(88)91125-2 http://linkinghub.elsevier.com/retrieve/pii/0370269388911252 1/1/1988
Complex Langevin solution to an effective theory of compact lattice QED Bili?, Neven; Gausterer, H.; Sanielevici, S. Physics Letters B 2 198 3702693 10.1016/0370-2693(87)91503-6 http://linkinghub.elsevier.com/retrieve/pii/0370269387915036 11/1/1987
A numerical study of Langevin QCD with dynamical quarks Gavai, R.V.; Potvin, J.; Sanielevici, S. Physics Letters B 1 183 3702693 10.1016/0370-2693(87)91422-5 http://linkinghub.elsevier.com/retrieve/pii/0370269387914225 1/1/1987
Surface tension and universality in the Ising model Gausterer, H.; Potvin, J.; Rebbi, C.; Sanielevici, S. Physica A: Statistical Mechanics and its Applications 3 192 3784371 10.1016/0378-4371(93)90052-6 http://linkinghub.elsevier.com/retrieve/pii/0378437193900526 1/1/1993
Can topology solve the UA(1) problem in the real world? Gausterer, H.; Potvin, J.; Sanielevici, S.; Woit, P. Physics Letters B 3/4/2017 233 3702693 10.1016/0370-2693(89)91337-3 http://linkinghub.elsevier.com/retrieve/pii/0370269389913373 12/1/1989
Binder energy cumulant for SU(3) lattice gauge theory Alves, Nelson A.; Berg, Bernd A.; Sanielevici, Sergiu Physics Letters B 4 241 3702693 10.1016/0370-2693(90)91869-D http://linkinghub.elsevier.com/retrieve/pii/037026939091869D 5/1/1990
Spectral density analysis of the chiral transition in nf=4 finite temperature QCD Alves, Nelson A.; Berg, Bernd A.; Duke, Dennis W.; Irbäck, Anders; Sanielevici, Sergiu Physics Letters B 3/4/2017 280 3702693 10.1016/0370-2693(92)90064-B http://linkinghub.elsevier.com/retrieve/pii/037026939290064B 4/1/1992
Finite-temperature chiral transition in real-world QCD? Sanielevici, S. Nuclear Physics B – Proceedings Supplements   4 9205632 10.1016/0920-5632(88)90120-X http://linkinghub.elsevier.com/retrieve/pii/092056328890120X 4/1/1988
Remarks on the numerical solution of Langevin equations on unitary groups spaces Gausterer, H.; Sanielevici, S. Computer Physics Communications 1 52 104655 10.1016/0010-4655(88)90170-1 http://linkinghub.elsevier.com/retrieve/pii/0010465588901701 12/1/1988
Finite temperature QCD with low mass dynamical quarks Gavai, R.V.; Potvin, J.; Sanielevici, S. Nuclear Physics B – Proceedings Supplements   4 9205632 10.1016/0920-5632(88)90112-0 http://linkinghub.elsevier.com/retrieve/pii/0920563288901120 4/1/1988
Development of a minature pCO2 electrode for biomedical applications Lai, N. C.; Liu, C. C.; Brown, E. G.; Neuman, M. R.; Ko, W. H. Medical & Biological Engineering 6 13 0025-696X     11/1/1975
NCBI-BLAST programs optimization on XSEDE resources for sustainable aquaculture Seetharam, Arun; Gomez, Antonio; Purcell, Catherine M.; Hyde, John R.; Blood, Philip D.; Severin, Andrew J.         10.1145/2792745.2792749 http://dl.acm.org/citation.cfm?doid=2792745.2792749 2015
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture Ghaffari, Noushin; Sanchez-Flores, Alejandro; Doan, Ryan; Garcia-Orozco, Karina D.; Chen, Patricia L.; Ochoa-Leyva, Adrian; Lopez-Zavala, Alonso A.; Carrasco, J. Salvador; Hong, Chris; Brieba, Luis G.; Rudiño-Piñera, Enrique; Blood, Philip D.; Sawyer, Jason E.; Johnson, Charles D.; Dindot, Scott V.; Sotelo-Mundo, Rogerio R.; Criscitiello, Michael F. Scientific Reports   4 2045-2322 10.1038/srep07081   11/25/2014
Large-scale Sequencing and Assembly of Cereal Genomes Using Blacklight Blood, Philip D.; Marcus, Shoshana; Schatz, Michael C.         10.1145/2616498.2616502 http://dl.acm.org/citation.cfm?doid=2616498.2616502 2014
Leveraging the national cyberinfrastructure for biomedical research LeDuc, Richard; Vaughn, Matthew; Fonner, John M; Sullivan, Michael; Williams, James G; Blood, Philip D; Taylor, James; Barnett, William Journal of the American Medical Informatics Association 2 21 1067-5027, 1527-974X 10.1136/amiajnl-2013-002059 https://academic.oup.com/jamia/article-lookup/doi/10.1136/amiajnl-2013-002059 3/1/2014
Enabling large-scale next-generation sequence assembly with Blacklight Couger, M. Brian; Pipes, Lenore; Squina, Fabio; Prade, Rolf; Siepel, Adam; Palermo, Robert; Katze, Michael G.; Mason, Christopher E.; Blood, Philip D. Concurrency and Computation: Practice & Experience 13 26 1532-0626 10.1002/cpe.3231   9/10/2014
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis Haas, Brian J.; Papanicolaou, Alexie; Yassour, Moran; Grabherr, Manfred; Blood, Philip D.; Bowden, Joshua; Couger, Matthew Brian; Eccles, David; Li, Bo; Lieber, Matthias; Macmanes, Matthew D.; Ott, Michael; Orvis, Joshua; Pochet, Nathalie; Strozzi, Francesco; Weeks, Nathan; Westerman, Rick; William, Thomas; Dewey, Colin N.; Henschel, Robert; Leduc, Richard D.; Friedman, Nir; Regev, Aviv Nature Protocols 8 8 1750-2799 10.1038/nprot.2013.084   8/1/2013
The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics Pipes, Lenore; Li, Sheng; Bozinoski, Marjan; Palermo, Robert; Peng, Xinxia; Blood, Phillip; Kelly, Sara; Weiss, Jeffrey M.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Zumbo, Paul; Chen, Ronghua; Schroth, Gary P.; Mason, Christopher E.; Katze, Michael G. Nucleic Acids Research Database issue 41 1362-4962 10.1093/nar/gks1268   1/1/2013
Extending parallel scalability of LAMMPS and multiscale reactive molecular simulations Peng, Yuxing; Crosby, Lonnie; Knight, Chris; Voth, Gregory A.; Blood, Philip         10.1145/2335755.2335833 http://dl.acm.org/citation.cfm?doid=2335755.2335833 2012
Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamics Liwo, Adam; O?dziej, Stanis?aw; Czaplewski, Cezary; Kleinerman, Dana S.; Blood, Philip; Scheraga, Harold A. Journal of Chemical Theory and Computation 3 6 1549-9626 10.1021/ct9004068   3/9/2010
Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulations Blood, Philip D.; Swenson, Richard D.; Voth, Gregory A. Biophysical Journal 4 95 1542-0086 10.1529/biophysj.107.121160   8/1/2008
Probing the molecular-scale lipid bilayer response to shear flow using nonequilibrium molecular dynamics Blood, Philip D.; Ayton, Gary S.; Voth, Gregory A. The Journal of Physical Chemistry. B 39 109 1520-6106 10.1021/jp0530449   10/6/2005
Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulations Blood, Philip D.; Voth, Gregory A. Proceedings of the National Academy of Sciences of the United States of America 41 103 0027-8424 10.1073/pnas.0603917103   10/10/2006
Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulation Ayton, Gary S.; Blood, Philip D.; Voth, Gregory A. Biophysical Journal 10 92 0006-3495 10.1529/biophysj.106.101709   5/15/2007
Implications of the topological properties of Internet traffic on traffic engineering Uhlig, Steve; Bonaventure, Oliver; Magnin, Vincent; Rapier, Chris; Deri, Luca         10.1145/967900.967974 http://portal.acm.org/citation.cfm?doid=967900.967974 2004
TCGA Expedition: A Data Acquisition and Management System for TCGA Data Chandran, Uma R.; Medvedeva, Olga P.; Barmada, M. Michael; Blood, Philip D.; Chakka, Anish; Luthra, Soumya; Ferreira, Antonio; Wong, Kim F.; Lee, Adrian V.; Zhang, Zhihui; Budden, Robert; Scott, J. Ray; Berndt, Annerose; Berg, Jeremy M.; Jacobson, Rebecca S. PLOS ONE 10 11 1932-6203 10.1371/journal.pone.0165395 http://dx.plos.org/10.1371/journal.pone.0165395 10/27/2016
The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus Morgan, Josh Lyskowski; Berger, Daniel Raimund; Wetzel, Arthur Willis; Lichtman, Jeff William Cell 1 165 928674 10.1016/j.cell.2016.02.033 http://linkinghub.elsevier.com/retrieve/pii/S0092867416301350 3/1/2016
Network anatomy and in vivo physiology of visual cortical neurons Bock, Davi D.; Lee, Wei-Chung Allen; Kerlin, Aaron M.; Andermann, Mark L.; Hood, Greg; Wetzel, Arthur W.; Yurgenson, Sergey; Soucy, Edward R.; Kim, Hyon Suk; Reid, R. Clay Nature 7337 471 0028-0836, 1476-4687 10.1038/nature09802 http://www.nature.com/doifinder/10.1038/nature09802 3/10/2011
High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing Zhang, Xiaofeng; Badea, Cristian; Hood, Greg; Wetzel, Arthur; Qi, Yi; Stiles, Joel; Johnson, G. Allan Biomedical Optics Express 9 2 2156-7085, 2156-7085 10.1364/BOE.2.002449 https://www.osapublishing.org/boe/abstract.cfm?uri=boe-2-9-2449 9/1/2011
Factors Influencing the Emergence and Spread of HIV Drug Resistance Arising from Rollout of Antiretroviral Pre-Exposure Prophylaxis (PrEP) Abbas, Ume L.; Hood, Gregory; Wetzel, Arthur W.; Mellors, John W. PLoS ONE 4 6 1932-6203 10.1371/journal.pone.0018165 http://dx.plos.org/10.1371/journal.pone.0018165 4/15/2011
Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCT Zhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. Allan Proceedings of SPIE–the International Society for Optical Engineering 775706 7757 0277-786X 10.1117/12.841891   2010
Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agent Badea, Cristian T.; Wetzel, Arthur W.; Mistry, Nilesh; Pomerantz, Stuart; Nave, Demian; Johnson, G. Allan Computerized Medical Imaging and Graphics: The Official Journal of the Computerized Medical Imaging Society 3 32 0895-6111 10.1016/j.compmedimag.2007.12.004   4/1/2008
Design and analysis of a content-based pathology image retrieval system Zheng, Lei; Wetzel, Arthur W.; Gilbertson, John; Becich, Michael J. IEEE transactions on information technology in biomedicine: a publication of the IEEE Engineering in Medicine and Biology Society 4 7 1089-7771     12/1/2003
High-entropy alloys: fundamentals and applications               2016
Contemporary high performance computing: from petascale toward exascale Blood, Philip             2015