TitleAuthorPublication TitleIssueVolumeISSNDOIUrlDate
When are solar refrigerators less costly than on-grid refrigerators: A simulation modeling studyHaidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Connor, Diana L.; Spiker, Marie; Lee, Bruce Y.Vaccine17350264410X10.1016/j.vaccine.2016.11.103http://linkinghub.elsevier.com/retrieve/pii/S0264410X173005554/1/2017
Geospatial Planning and the Resulting Economic Impact of Human Papillomavirus Vaccine Introduction in Mozambique:Haidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Portnoy, Allison; Lee, Bruce Y.Sexually Transmitted Diseases4440148-571710.1097/OLQ.0000000000000574http://Insights.ovid.com/crossref?an=00007435-201704000-000064/1/2017
Map of different vaccine supply chain efficiency measuresHaidari, Leila A.; Brown, Shawn T.; Wedlock, Patrick; Lee, Bruce Y.Vaccine1350264410X10.1016/j.vaccine.2016.11.025http://linkinghub.elsevier.com/retrieve/pii/S0264410X163107261/1/2017
The economic value of increasing geospatial access to tetanus toxoid immunization in MozambiqueHaidari, Leila A.; Brown, Shawn T.; Constenla, Dagna; Zenkov, Eli; Ferguson, Marie; de Broucker, Gatien; Ozawa, Sachiko; Clark, Samantha; Lee, Bruce Y.Vaccine35340264410X10.1016/j.vaccine.2016.06.065http://linkinghub.elsevier.com/retrieve/pii/S0264410X163051637/1/2016
The impact of implementing a demand forecasting system into a low-income country’s supply chainMueller, Leslie E.; Haidari, Leila A.; Wateska, Angela R.; Phillips, Roslyn J.; Schmitz, Michelle M.; Connor, Diana L.; Norman, Bryan A.; Brown, Shawn T.; Welling, Joel S.; Lee, Bruce Y.Vaccine32340264410X10.1016/j.vaccine.2016.05.027http://linkinghub.elsevier.com/retrieve/pii/S0264410X163031767/1/2016
Landscaping the structures of GAVI country vaccine supply chains and testing the effects of radical redesignLee, Bruce Y.; Connor, Diana L.; Wateska, Angela R.; Norman, Bryan A.; Rajgopal, Jayant; Cakouros, Brigid E.; Chen, Sheng-I.; Claypool, Erin G.; Haidari, Leila A.; Karir, Veena; Leonard, Jim; Mueller, Leslie E.; Paul, Proma; Schmitz, Michelle M.; Welling, Joel S.; Weng, Yu-Ting; Brown, Shawn T.Vaccine36330264410X10.1016/j.vaccine.2015.07.033http://linkinghub.elsevier.com/retrieve/pii/S0264410X150097928/1/2015
Modular vaccine packaging increases packing efficiencyNorman, Bryan A.; Rajgopal, Jayant; Lim, Jung; Gorham, Katrin; Haidari, Leila; Brown, Shawn T.; Lee, Bruce Y.Vaccine27330264410X10.1016/j.vaccine.2015.04.091http://linkinghub.elsevier.com/retrieve/pii/S0264410X150057706/1/2015
The Benin experience: How computational modeling can assist major vaccine policy changes in low and middle income countriesLee, Bruce Y.; Schreiber, Benjamin; Wateska, Angela R.; Connor, Diana L.; Dicko, Hamadou M.; Jaillard, Philippe; Mvundura, Mercy; Levin, Carol; Avella, Mélanie; Haidari, Leila A.; Brown, Shawn T.Vaccine25330264410X10.1016/j.vaccine.2015.04.022http://linkinghub.elsevier.com/retrieve/pii/S0264410X150047526/1/2015
One size does not fit all: The impact of primary vaccine container size on vaccine distribution and deliveryHaidari, Leila A.; Wahl, Brian; Brown, Shawn T.; Privor-Dumm, Lois; Wallman-Stokes, Cecily; Gorham, Katie; Connor, Diana L.; Wateska, Angela R.; Schreiber, Benjamin; Dicko, Hamadou; Jaillard, Philippe; Avella, Melanie; Lee, Bruce Y.Vaccine28330264410X10.1016/j.vaccine.2015.04.018http://linkinghub.elsevier.com/retrieve/pii/S0264410X150047156/1/2015
Costs of vaccine programs across 94 low- and middle-income countriesPortnoy, Allison; Ozawa, Sachiko; Grewal, Simrun; Norman, Bryan A.; Rajgopal, Jayant; Gorham, Katrin M.; Haidari, Leila A.; Brown, Shawn T.; Lee, Bruce Y.Vaccine 330264410X10.1016/j.vaccine.2014.12.037http://linkinghub.elsevier.com/retrieve/pii/S0264410X140169095/1/2015
Augmenting Transport versus Increasing Cold Storage to Improve Vaccine Supply ChainsHaidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Chen, Sheng-I; Lee, Bruce Y.PLoS ONE581932-620310.1371/journal.pone.0064303http://dx.plos.org/10.1371/journal.pone.00643035/22/2013
Only Adding Stationary Storage to Vaccine Supply Chains May Create and Worsen Transport Bottlenecks:Haidari, Leila A.; Connor, Diana L.; Wateska, Angela R.; Brown, Shawn T.; Mueller, Leslie E.; Norman, Bryan A.; Schmitz, Michelle M.; Paul, Proma; Rajgopal, Jayant; Welling, Joel S.; Leonard, Jim; Claypool, Erin G.; Weng, Yu-Ting; Chen, Sheng-I; Lee, Bruce Y.Journal of Public Health Management and Practice 191078-465910.1097/PHH.0b013e31828a83fehttp://content.wkhealth.com/linkback/openurl?sid=WKPTLP:landingpage&an=00124784-201309001-000152013
Temperature dependence of the 19F transferred hyperfine interaction in the EPR of Mn2+:PbF2Madrid, null; King, null; Jaccarino, nullPhysical Review. B, Condensed Matter9310163-1829  5/1/1985
High-field 19F NMR relaxation studies in the superionic conductor Mn:PbF2Madrid, null; King, null; Jaccarino, nullPhysical Review. B, Condensed Matter5320163-1829  9/1/1985
The structure of proteins and their binding sites: NMR and artificial intelligenceJardetzky, O.; Lichtarge, O.; Brinkley, J.; Madrid, M.Progress in Clinical and Biological Research 2890361-7742  1989
Refined solution structure and ligand-binding properties of PDC-109 domain b. A collagen-binding type II domainConstantine, K. L.; Madrid, M.; Bányai, L.; Trexler, M.; Patthy, L.; Llinás, M.Journal of Molecular Biology12230022-2836  1/5/1992
Restoring allosterism with compensatory mutations in hemoglobinKim, H. W.; Shen, T. J.; Sun, D. P.; Ho, N. T.; Madrid, M.; Tam, M. F.; Zou, M.; Cottam, P. F.; Ho, C.Proceedings of the National Academy of Sciences of the United States of America24910027-8424  11/22/1994
A novel low oxygen affinity recombinant hemoglobin (alpha96val–> Trp): switching quaternary structure without changing the ligation stateKim, H. W.; Shen, T. J.; Sun, D. P.; Ho, N. T.; Madrid, M.; Ho, C.Journal of Molecular Biology42480022-283610.1006/jmbi.1995.0267 5/12/1995
XSEDE Training: Achieving Access and InclusionAkli, Linda; Alameda, Jay; Gordon, Steven I.; Madrid, Marcela; Rivera, Lorna    10.1145/2949550.2949586http://dl.acm.org/citation.cfm?doid=2949550.29495862016
Evaluation and synthesis of AZT prodrugs with optimized chemical stabilities: experimental and theoretical analysesRibone, Sergio R.; Schenfeld, Esteban M.; Madrid, Marcela; Pierini, Adriana B.; Quevedo, Mario A.New J. Chem.3401144-0546, 1369-926110.1039/C5NJ03002Ahttp://xlink.rsc.org/?DOI=C5NJ03002A2016
Synthesis, biological evaluation and molecular modeling of 4,6-diarylpyrimidines and diarylbenzenes as novel non-nucleosides HIV-1 reverse transcriptase inhibitorsRibone, Sergio R.; Leen, Volker; Madrid, Marcela; Dehaen, Wim; Daelemans, Dirk; Pannecouque, Christophe; Briñón, Margarita C.European Journal of Medicinal Chemistry 58223523410.1016/j.ejmech.2012.10.036http://linkinghub.elsevier.com/retrieve/pii/S022352341200640X12/1/2012
Effect of Backbone Flexibility on Charge Transfer Rates in Peptide Nucleic Acid DuplexesWierzbinski, Emil; de Leon, Arnie; Yin, Xing; Balaeff, Alexander; Davis, Kathryn L.; Reppireddy, Srinivas; Venkatramani, Ravindra; Keinan, Shahar; Ly, Danith H.; Madrid, Marcela; Beratan, David N.; Achim, Catalina; Waldeck, David H.Journal of the American Chemical Society221340002-7863, 1520-512610.1021/ja301677zhttp://pubs.acs.org/doi/abs/10.1021/ja301677z6/6/2012
Rational Approaches for the Design of Effective Human Immunodeficiency Virus Type 1 Nonnucleoside Reverse Transcriptase InhibitorsRibone, Sergio R.; Quevedo, Mario A.; Madrid, Marcela; Briñón, Margarita C.Journal of Chemical Information and Modeling1511549-9596, 1549-960X10.1021/ci1001636http://pubs.acs.org/doi/abs/10.1021/ci10016361/24/2011
The structure of a ?-modified peptide nucleic acid duplexHe, Wei; Crawford, Matthew J.; Rapireddy, Srinivas; Madrid, Marcela; Gil, Roberto R.; Ly, Danith H.; Achim, CatalinaMolecular BioSystems961742-206X, 1742-205110.1039/c002254chttp://xlink.rsc.org/?DOI=c002254c2010
Crystal Structure of Chiral ?PNA with Complementary DNA Strand: Insights into the Stability and Specificity of Recognition and Conformational PreorganizationYeh, Joanne I.; Shivachev, Boris; Rapireddy, Srinivas; Crawford, Matthew J.; Gil, Roberto R.; Du, Shoucheng; Madrid, Marcela; Ly, Danith H.Journal of the American Chemical Society311320002-7863, 1520-512610.1021/ja907225dhttp://pubs.acs.org/doi/abs/10.1021/ja907225d8/11/2010
Side effects of colaspaseSummerfield, G.; Swirsky, D.British Medical Journal614820007-1447  11/11/1978
Solution Structure of a Peptide Nucleic Acid Duplex from NMR Data: Features and LimitationsHe, Wei; Hatcher, Elizabeth; Balaeff, Alexander; Beratan, David N.; Gil, Roberto R.; Madrid, Marcela; Achim, CatalinaJournal of the American Chemical Society401300002-7863, 1520-512610.1021/ja800652hhttp://pubs.acs.org/doi/abs/10.1021/ja800652h10/8/2008
Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCTZhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. AllanProceedings of SPIE–the International Society for Optical Engineering77570677570277-786X10.1117/12.841891 2010
Network anatomy and in vivo physiology of visual cortical neuronsBock, Davi D.; Lee, Wei-Chung Allen; Kerlin, Aaron M.; Andermann, Mark L.; Hood, Greg; Wetzel, Arthur W.; Yurgenson, Sergey; Soucy, Edward R.; Kim, Hyon Suk; Reid, R. ClayNature73374711476-468710.1038/nature09802 3/10/2011
Factors influencing the emergence and spread of HIV drug resistance arising from rollout of antiretroviral pre-exposure prophylaxis (PrEP)Abbas, Ume L.; Hood, Gregory; Wetzel, Arthur W.; Mellors, John W.PloS One461932-620310.1371/journal.pone.0018165 4/15/2011
High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computingZhang, Xiaofeng; Badea, Cristian; Hood, Greg; Wetzel, Arthur; Qi, Yi; Stiles, Joel; Johnson, G. AllanBiomedical Optics Express922156-708510.1364/BOE.2.002449 9/1/2011
Antiretroviral therapy and pre-exposure prophylaxis: combined impact on HIV transmission and drug resistance in South AfricaAbbas, Ume L.; Glaubius, Robert; Mubayi, Anuj; Hood, Gregory; Mellors, John W.The Journal of Infectious Diseases22081537-661310.1093/infdis/jit150 7/15/2013
Antiretroviral treatment, preexposure prophylaxis, and drug resistance in sub-Saharan Africa: a consensus among mathematical modelsAbbas, Ume L.; Glaubius, Robert; Hood, Gregory; Mellors, John W.The Journal of Infectious Diseases12091537-661310.1093/infdis/jit545 1/1/2014
Anatomy and function of an excitatory network in the visual cortexLee, Wei-Chung Allen; Bonin, Vincent; Reed, Michael; Graham, Brett J.; Hood, Greg; Glattfelder, Katie; Reid, R. ClayNature75995321476-468710.1038/nature17192 4/21/2016
Cost-effectiveness of Injectable Preexposure Prophylaxis for HIV Prevention in South AfricaGlaubius, Robert L.; Hood, Greg; Penrose, Kerri J.; Parikh, Urvi M.; Mellors, John W.; Bendavid, Eran; Abbas, Ume L.Clinical Infectious Diseases: An Official Publication of the Infectious Diseases Society of America4631537-659110.1093/cid/ciw321 8/15/2016
Interferon suppresses glutamine synthetase induction in chick embryonic neural retinaMatsuno, T.; Shirasawa, N.; Kohno, S.Biochemical and Biophysical Research Communications1700006-291X  5/3/1976
Effectors of Visual Search Efficacy on the Allegheny PlateauChiacchia, Kenneth B.; Houlahan, Heather E.Wilderness & Environmental Medicine3211080603210.1016/j.wem.2010.06.002http://linkinghub.elsevier.com/retrieve/pii/S10806032100019619/1/2010
Deriving Effective Sweep Width for Air-scent Dog TeamsChiacchia, Kenneth B.; Houlahan, Heather E.; Hostetter, Rebecca S.Wilderness & Environmental Medicine2261080603210.1016/j.wem.2014.10.004http://linkinghub.elsevier.com/retrieve/pii/S10806032140032026/1/2015
Use of the Visual Range of Detection to Estimate Effective Sweep Width for Land Search and Rescue Based On 10 Detection Experiments in North AmericaKoester, Robert J.; Chiacchia, Kenneth B.; Twardy, Charles R.; Cooper, Donald C.; Frost, John R.; Robe, R. QuincyWilderness & Environmental Medicine2251080603210.1016/j.wem.2013.09.016http://linkinghub.elsevier.com/retrieve/pii/S10806032130026646/1/2014
Quantitation of the class I disulfides of the insulin receptorChiacchia, Kenneth B.Biochemical and Biophysical Research Communications31760006291X10.1016/0006-291X(91)90409-Zhttp://linkinghub.elsevier.com/retrieve/pii/0006291X9190409Z5/1/1991
[Language of the other]von Ferber, L.Fortschritte Der Medizin34930015-8178  12/4/1975
Studies of oxygen binding energy to hemoglobin moleculeChow, Y. W.; Pietranico, R.; Mukerji, A.Biochemical and Biophysical Research Communications4660006-291X  10/27/1975
Reoxidation of the class I disulfides of the rat adipocyte insulin receptor is dependent upon the presence of insulin: the class I disulfide of the insulin receptor is extracellularChiacchia, Kenneth B.Biochemistry13270006-2960, 1520-499510.1021/bi00413a046http://pubs.acs.org/doi/abs/10.1021/bi00413a0466/1/1988
A sustainable national gateway for biological computationTaylor, James; Budden, Robert; Nekrutenko, Anton; Coraor, Nate; Blood, Philip D.; Ropelewski, Alex; Zhang, Zhihui; Palencia, Josephine; Sanielevici, Sergiu; Yanovich, Jared    10.1145/2484762.2484817http://dl.acm.org/citation.cfm?doid=2484762.24848172013
The data supercellNowoczynski, Paul; Sommerfield, Jason; Yanovich, Jared; Scott, J. Ray; Zhang, Zhihui; Levine, Michael    10.1145/2335755.2335805http://dl.acm.org/citation.cfm?doid=2335755.23358052012
hFS: a hybrid file system prototype for improving small file and metadata performanceZhang, Zhihui; Ghose, KanadACM SIGOPS Operating Systems Review341163598010.1145/1272998.1273016http://portal.acm.org/citation.cfm?doid=1272998.12730166/1/2007
Proceedings of the 2008 3rd Petascale Data Storage Workshop (PDSW ’08): November 17, 2008, Austin, TX       2008
Proceedings of the 2006 International Conference on Parallel & Distributed Processing Techniques and Applications & Conference on Real-Time Computing Systems & Applications:: Las Vegas, Nevada, USA, June 26 – 29, 2006. Vol. 2: […]       2006
Digitoxin metabolism by rat liver microsomesSchmoldt, A.; Benthe, H. F.; Haberland, G.Biochemical Pharmacology17241873-2968  9/1/1975
[Some physical and chemical properties of serinesulfhydrase from chicken liver]Yefremova, L. L.; Goryachenkova, E. V.Biokhimiia (Moscow, Russia)3400320-9725  6/1/1975
Bridges: a uniquely flexible HPC resource for new communities and data analyticsNystrom, Nicholas A.; Levine, Michael J.; Roskies, Ralph Z.; Scott, J. Ray    10.1145/2792745.2792775http://dl.acm.org/citation.cfm?doid=2792745.27927752015
Bridges: a uniquely flexible HPC resource for new communities and data analyticsNystrom, Nicholas A.; Levine, Michael J.; Roskies, Ralph Z.; Scott, J. Ray    10.1145/2792745.2792775http://dl.acm.org/citation.cfm?doid=2792745.27927752015
An ab initio investgation of ideal tensile and shear strength of TiVNbMo high-entropy alloyTian, Fuyang; Wang, Dongping; Shen, Jiang; Wang, YangMaterials Letters 1660167577X10.1016/j.matlet.2015.12.064http://linkinghub.elsevier.com/retrieve/pii/S0167577X1531017X3/1/2016
A full-potential approach to the relativistic single-site Green’s functionLiu, Xianglin; Wang, Yang; Eisenbach, Markus; Malcolm Stocks, GJournal of Physics: Condensed Matter35280953-8984, 1361-648X10.1088/0953-8984/28/35/355501http://stacks.iop.org/0953-8984/28/i=35/a=355501?key=crossref.ca2dfb5a2e5eec4d5273ba80dde84ac49/7/2016
Beyond Atomic Sizes and Hume-Rothery Rules: Understanding and Predicting High-Entropy AlloysTroparevsky, M. Claudia; Morris, James R.; Daene, Markus; Wang, Yang; Lupini, Andrew R.; Stocks, G. MalcolmJOM10671047-4838, 1543-185110.1007/s11837-015-1594-2http://link.springer.com/10.1007/s11837-015-1594-210/1/2015
The single-site Green’s function and Krein’s theoremWang, Yang; Stocks, G Malcolm; Faulkner, J SJournal of Physics: Condensed Matter27260953-8984, 1361-648X10.1088/0953-8984/26/27/274208http://stacks.iop.org/0953-8984/26/i=27/a=274208?key=crossref.fa2806982f678cfe50ad26dd66b36a857/9/2014
Green’s functions in full-potential multiple-scattering theoryRusanu, A.; Stocks, G. M.; Wang, Y.; Faulkner, J. S.Physical Review B3841098-0121, 1550-235X10.1103/PhysRevB.84.035102https://link.aps.org/doi/10.1103/PhysRevB.84.0351027/13/2011
Calculated electronic and magnetic structure of screw dislocations in alpha ironOdbadrakh, K.; Rusanu, A.; Stocks, G. M.; Samolyuk, G. D.; Eisenbach, M.; Wang, Yang; Nicholson, D. M.Journal of Applied Physics71090021-8979, 1089-755010.1063/1.3562217http://aip.scitation.org/doi/10.1063/1.35622174/1/2011
A study of radiation damage effects on the magnetic structure of bulk IronWang, Yang; Nicholson, D. M. C.; Stocks, G. M.; Rusanu, Aurelian; Eisenbach, Markus; Stoller, R. E.Journal of Applied Physics71090021-8979, 1089-755010.1063/1.3553937http://aip.scitation.org/doi/10.1063/1.35539374/1/2011
A Theoretical Study of the Magnetic Structure of Bulk Iron with Radiation DefectsWang, Yang; Nicholson, D.M.C.; Stocks, G.M.; Rusanu, Aurelian; Eisenbach, Markus; Stoller, R. E.MRS Proceedings 13631946-427410.1557/opl.2011.1283http://journals.cambridge.org/abstract_S19464274110128381/1/2011
Charge Distributions in Metallic Alloys: A Charge-Excess Functional Theory ApproachBruno, Ezio; Zingales, Leon; Wang, YangPhysical Review Letters16910031-9007, 1079-711410.1103/PhysRevLett.91.166401https://link.aps.org/doi/10.1103/PhysRevLett.91.16640110/14/2003
Electronic and Magnetic Structure of ${\rm L}1_{0}$-FePt Nanoparticle Embedded in FePt Random AlloyWang, Yang; Stocks, G. M.; Rusanu, Aurelian; Nicholson, D. M. C.; Eisenbach, Markus; Zhang, Qiming; Liu, J. P.IEEE Transactions on Magnetics6430018-946410.1109/TMAG.2007.893856http://ieeexplore.ieee.org/document/4202986/6/1/2007
The first principles O[N] LSMS method and its applications to magnetic structure of alloysWang, Y.; Stocks, G.M.; Nicholson, D.M.C.; Shelton, W.A.Computers & Mathematics with Applications735898122110.1016/S0898-1221(98)00035-2http://linkinghub.elsevier.com/retrieve/pii/S08981221980003524/1/1998
Coulomb energies in alloysFaulkner, J. S.; Wang, Yang; Stocks, G. M.Physical Review B12550163-1829, 1095-379510.1103/PhysRevB.55.7492https://link.aps.org/doi/10.1103/PhysRevB.55.74923/15/1997
Core Level Chemical Shifts in Metallic AlloysFaulkner, J. S.; Wang, Yang; Stocks, G. M.Physical Review Letters9810031-9007, 1079-711410.1103/PhysRevLett.81.1905https://link.aps.org/doi/10.1103/PhysRevLett.81.19058/31/1998
Noncollinear magnetic structure in Ni0.35Fe0.65Wang, Yang; Stocks, G. M.; Nicholson, D. M. C.; Shelton, W. A.; Antropov, V. P.; Harmon, B. N.Journal of Applied Physics8810021-8979, 1089-755010.1063/1.364740http://aip.scitation.org/doi/10.1063/1.3647404/15/1997
Impact of Short-Range Forces on Defect Production from High-Energy CollisionsStoller, R. E.; Tamm, A.; Béland, L. K.; Samolyuk, G. D.; Stocks, G. M.; Caro, A.; Slipchenko, L. V.; Osetsky, Yu. N.; Aabloo, A.; Klintenberg, M.; Wang, Y.Journal of Chemical Theory and Computation6121549-9618, 1549-962610.1021/acs.jctc.5b01194http://pubs.acs.org/doi/abs/10.1021/acs.jctc.5b011946/14/2016
A sustainable national gateway for biological computationTaylor, James; Budden, Robert; Nekrutenko, Anton; Coraor, Nate; Blood, Philip D.; Ropelewski, Alex; Zhang, Zhihui; Palencia, Josephine; Sanielevici, Sergiu; Yanovich, Jared    10.1145/2484762.2484817http://dl.acm.org/citation.cfm?doid=2484762.24848172013
Spectral density study of the SU(3) deconfining phase transitionAlves, Nelson A.; Berg, Bernd A.; Sanielevici, SergiuNuclear Physics B1376550321310.1016/0550-3213(92)90075-Mhttp://linkinghub.elsevier.com/retrieve/pii/055032139290075M6/1/1992
Can the chiral transition in QCD be described by a linear sigma-model in three dimensions?Gausterer, H.; Sanielevici, S.Physics Letters B4209370269310.1016/0370-2693(88)91188-4http://linkinghub.elsevier.com/retrieve/pii/03702693889118848/1/1988
PHYSICS GOALS OF THE QCD TERAFLOP PROJECTAoki, Sinya; Shrock, Robert; Berg, Bernd; Bernard, Claude; Ogilvie, Michael; Petcher, Don; Bhanot, Gyan; Rossi, Pietro; Bitar, Khalil; Edwards, Robert; Heller, Urs M.; Kennedy, Anthony; Sanielevici, Sergio; Brower, Richard; Potvin, Jean; Rebbi, Claudio; Brown, Frank R.; Christ, Norman; Mawhinney, Robert; Detar, Carleton; Draper, Terrence; Liu, Keh-Fei; Gottlieb, Steve; Hamber, Herbert; Kilcup, Greg; Shigemitsu, Junko; Kogut, John; Kronfeld, Andreas; Lee, I-Hsiu; Negele, John; Ohta, Shigemi; Sexton, James C.; Shuryak, Edward; Sinclair, D.K.; Soni, Amarjit; Wilcox, WalterInternational Journal of Modern Physics C420129-1831, 1793-658610.1142/S0129183191001049http://www.worldscientific.com/doi/abs/10.1142/S012918319100104912/1/1991
Distributed, on-demand, data-intensive and collaborative simulation analysisBreckenridge, Arthurine; Pierson, Lyndon; Sanielevici, Sergiu; Welling, Joel; Keller, Rainer; Woessner, Uwe; Schulze, JuergenFuture Generation Computer Systems6190167739X10.1016/S0167-739X(03)00065-7http://linkinghub.elsevier.com/retrieve/pii/S0167739X030006578/1/2003
On the chiral phase transition in two-flavor lattice QCDGavai, R.V.; Potvin, J.; Sanielevici, S.Physics Letters B1/2/2017200370269310.1016/0370-2693(88)91125-2http://linkinghub.elsevier.com/retrieve/pii/03702693889112521/1/1988
On the chiral phase transition in two-flavor lattice QCDGavai, R.V.; Potvin, J.; Sanielevici, S.Physics Letters B1/2/2017200370269310.1016/0370-2693(88)91125-2http://linkinghub.elsevier.com/retrieve/pii/03702693889112521/1/1988
Complex Langevin solution to an effective theory of compact lattice QEDBili?, Neven; Gausterer, H.; Sanielevici, S.Physics Letters B2198370269310.1016/0370-2693(87)91503-6http://linkinghub.elsevier.com/retrieve/pii/037026938791503611/1/1987
A numerical study of Langevin QCD with dynamical quarksGavai, R.V.; Potvin, J.; Sanielevici, S.Physics Letters B1183370269310.1016/0370-2693(87)91422-5http://linkinghub.elsevier.com/retrieve/pii/03702693879142251/1/1987
Surface tension and universality in the Ising modelGausterer, H.; Potvin, J.; Rebbi, C.; Sanielevici, S.Physica A: Statistical Mechanics and its Applications3192378437110.1016/0378-4371(93)90052-6http://linkinghub.elsevier.com/retrieve/pii/03784371939005261/1/1993
Can topology solve the UA(1) problem in the real world?Gausterer, H.; Potvin, J.; Sanielevici, S.; Woit, P.Physics Letters B3/4/2017233370269310.1016/0370-2693(89)91337-3http://linkinghub.elsevier.com/retrieve/pii/037026938991337312/1/1989
Binder energy cumulant for SU(3) lattice gauge theoryAlves, Nelson A.; Berg, Bernd A.; Sanielevici, SergiuPhysics Letters B4241370269310.1016/0370-2693(90)91869-Dhttp://linkinghub.elsevier.com/retrieve/pii/037026939091869D5/1/1990
Spectral density analysis of the chiral transition in nf=4 finite temperature QCDAlves, Nelson A.; Berg, Bernd A.; Duke, Dennis W.; Irbäck, Anders; Sanielevici, SergiuPhysics Letters B3/4/2017280370269310.1016/0370-2693(92)90064-Bhttp://linkinghub.elsevier.com/retrieve/pii/037026939290064B4/1/1992
Finite-temperature chiral transition in real-world QCD?Sanielevici, S.Nuclear Physics B – Proceedings Supplements 4920563210.1016/0920-5632(88)90120-Xhttp://linkinghub.elsevier.com/retrieve/pii/092056328890120X4/1/1988
Remarks on the numerical solution of Langevin equations on unitary groups spacesGausterer, H.; Sanielevici, S.Computer Physics Communications15210465510.1016/0010-4655(88)90170-1http://linkinghub.elsevier.com/retrieve/pii/001046558890170112/1/1988
Finite temperature QCD with low mass dynamical quarksGavai, R.V.; Potvin, J.; Sanielevici, S.Nuclear Physics B – Proceedings Supplements 4920563210.1016/0920-5632(88)90112-0http://linkinghub.elsevier.com/retrieve/pii/09205632889011204/1/1988
Development of a minature pCO2 electrode for biomedical applicationsLai, N. C.; Liu, C. C.; Brown, E. G.; Neuman, M. R.; Ko, W. H.Medical & Biological Engineering6130025-696X  11/1/1975
NCBI-BLAST programs optimization on XSEDE resources for sustainable aquacultureSeetharam, Arun; Gomez, Antonio; Purcell, Catherine M.; Hyde, John R.; Blood, Philip D.; Severin, Andrew J.    10.1145/2792745.2792749http://dl.acm.org/citation.cfm?doid=2792745.27927492015
Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood maricultureGhaffari, Noushin; Sanchez-Flores, Alejandro; Doan, Ryan; Garcia-Orozco, Karina D.; Chen, Patricia L.; Ochoa-Leyva, Adrian; Lopez-Zavala, Alonso A.; Carrasco, J. Salvador; Hong, Chris; Brieba, Luis G.; Rudiño-Piñera, Enrique; Blood, Philip D.; Sawyer, Jason E.; Johnson, Charles D.; Dindot, Scott V.; Sotelo-Mundo, Rogerio R.; Criscitiello, Michael F.Scientific Reports 42045-232210.1038/srep07081 11/25/2014
Large-scale Sequencing and Assembly of Cereal Genomes Using BlacklightBlood, Philip D.; Marcus, Shoshana; Schatz, Michael C.    10.1145/2616498.2616502http://dl.acm.org/citation.cfm?doid=2616498.26165022014
Leveraging the national cyberinfrastructure for biomedical researchLeDuc, Richard; Vaughn, Matthew; Fonner, John M; Sullivan, Michael; Williams, James G; Blood, Philip D; Taylor, James; Barnett, WilliamJournal of the American Medical Informatics Association2211067-5027, 1527-974X10.1136/amiajnl-2013-002059https://academic.oup.com/jamia/article-lookup/doi/10.1136/amiajnl-2013-0020593/1/2014
Enabling large-scale next-generation sequence assembly with BlacklightCouger, M. Brian; Pipes, Lenore; Squina, Fabio; Prade, Rolf; Siepel, Adam; Palermo, Robert; Katze, Michael G.; Mason, Christopher E.; Blood, Philip D.Concurrency and Computation: Practice & Experience13261532-062610.1002/cpe.3231 9/10/2014
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysisHaas, Brian J.; Papanicolaou, Alexie; Yassour, Moran; Grabherr, Manfred; Blood, Philip D.; Bowden, Joshua; Couger, Matthew Brian; Eccles, David; Li, Bo; Lieber, Matthias; Macmanes, Matthew D.; Ott, Michael; Orvis, Joshua; Pochet, Nathalie; Strozzi, Francesco; Weeks, Nathan; Westerman, Rick; William, Thomas; Dewey, Colin N.; Henschel, Robert; Leduc, Richard D.; Friedman, Nir; Regev, AvivNature Protocols881750-279910.1038/nprot.2013.084 8/1/2013
The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomicsPipes, Lenore; Li, Sheng; Bozinoski, Marjan; Palermo, Robert; Peng, Xinxia; Blood, Phillip; Kelly, Sara; Weiss, Jeffrey M.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Zumbo, Paul; Chen, Ronghua; Schroth, Gary P.; Mason, Christopher E.; Katze, Michael G.Nucleic Acids ResearchDatabase issue411362-496210.1093/nar/gks1268 1/1/2013
Extending parallel scalability of LAMMPS and multiscale reactive molecular simulationsPeng, Yuxing; Crosby, Lonnie; Knight, Chris; Voth, Gregory A.; Blood, Philip    10.1145/2335755.2335833http://dl.acm.org/citation.cfm?doid=2335755.23358332012
Implementation of molecular dynamics and its extensions with the coarse-grained UNRES force field on massively parallel systems; towards millisecond-scale simulations of protein structure, dynamics, and thermodynamicsLiwo, Adam; O?dziej, Stanis?aw; Czaplewski, Cezary; Kleinerman, Dana S.; Blood, Philip; Scheraga, Harold A.Journal of Chemical Theory and Computation361549-962610.1021/ct9004068 3/9/2010
Factors influencing local membrane curvature induction by N-BAR domains as revealed by molecular dynamics simulationsBlood, Philip D.; Swenson, Richard D.; Voth, Gregory A.Biophysical Journal4951542-008610.1529/biophysj.107.121160 8/1/2008
Probing the molecular-scale lipid bilayer response to shear flow using nonequilibrium molecular dynamicsBlood, Philip D.; Ayton, Gary S.; Voth, Gregory A.The Journal of Physical Chemistry. B391091520-610610.1021/jp0530449 10/6/2005
Direct observation of Bin/amphiphysin/Rvs (BAR) domain-induced membrane curvature by means of molecular dynamics simulationsBlood, Philip D.; Voth, Gregory A.Proceedings of the National Academy of Sciences of the United States of America411030027-842410.1073/pnas.0603917103 10/10/2006
Membrane remodeling from N-BAR domain interactions: insights from multi-scale simulationAyton, Gary S.; Blood, Philip D.; Voth, Gregory A.Biophysical Journal10920006-349510.1529/biophysj.106.101709 5/15/2007
Implications of the topological properties of Internet traffic on traffic engineeringUhlig, Steve; Bonaventure, Oliver; Magnin, Vincent; Rapier, Chris; Deri, Luca    10.1145/967900.967974http://portal.acm.org/citation.cfm?doid=967900.9679742004
TCGA Expedition: A Data Acquisition and Management System for TCGA DataChandran, Uma R.; Medvedeva, Olga P.; Barmada, M. Michael; Blood, Philip D.; Chakka, Anish; Luthra, Soumya; Ferreira, Antonio; Wong, Kim F.; Lee, Adrian V.; Zhang, Zhihui; Budden, Robert; Scott, J. Ray; Berndt, Annerose; Berg, Jeremy M.; Jacobson, Rebecca S.PLOS ONE10111932-620310.1371/journal.pone.0165395http://dx.plos.org/10.1371/journal.pone.016539510/27/2016
The Fuzzy Logic of Network Connectivity in Mouse Visual ThalamusMorgan, Josh Lyskowski; Berger, Daniel Raimund; Wetzel, Arthur Willis; Lichtman, Jeff WilliamCell116592867410.1016/j.cell.2016.02.033http://linkinghub.elsevier.com/retrieve/pii/S00928674163013503/1/2016
Network anatomy and in vivo physiology of visual cortical neuronsBock, Davi D.; Lee, Wei-Chung Allen; Kerlin, Aaron M.; Andermann, Mark L.; Hood, Greg; Wetzel, Arthur W.; Yurgenson, Sergey; Soucy, Edward R.; Kim, Hyon Suk; Reid, R. ClayNature73374710028-0836, 1476-468710.1038/nature09802http://www.nature.com/doifinder/10.1038/nature098023/10/2011
High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computingZhang, Xiaofeng; Badea, Cristian; Hood, Greg; Wetzel, Arthur; Qi, Yi; Stiles, Joel; Johnson, G. AllanBiomedical Optics Express922156-7085, 2156-708510.1364/BOE.2.002449https://www.osapublishing.org/boe/abstract.cfm?uri=boe-2-9-24499/1/2011
Factors Influencing the Emergence and Spread of HIV Drug Resistance Arising from Rollout of Antiretroviral Pre-Exposure Prophylaxis (PrEP)Abbas, Ume L.; Hood, Gregory; Wetzel, Arthur W.; Mellors, John W.PLoS ONE461932-620310.1371/journal.pone.0018165http://dx.plos.org/10.1371/journal.pone.00181654/15/2011
Free-space fluorescence tomography with adaptive sampling based on anatomical information from microCTZhang, Xiaofeng; Badea, Cristian T.; Hood, Greg; Wetzel, Arthur W.; Stiles, Joel R.; Johnson, G. AllanProceedings of SPIE–the International Society for Optical Engineering77570677570277-786X10.1117/12.841891 2010
Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agentBadea, Cristian T.; Wetzel, Arthur W.; Mistry, Nilesh; Pomerantz, Stuart; Nave, Demian; Johnson, G. AllanComputerized Medical Imaging and Graphics: The Official Journal of the Computerized Medical Imaging Society3320895-611110.1016/j.compmedimag.2007.12.004 4/1/2008
Design and analysis of a content-based pathology image retrieval systemZheng, Lei; Wetzel, Arthur W.; Gilbertson, John; Becich, Michael J.IEEE transactions on information technology in biomedicine: a publication of the IEEE Engineering in Medicine and Biology Society471089-7771  12/1/2003
High-entropy alloys: fundamentals and applications       2016
Contemporary high performance computing: from petascale toward exascaleBlood, Philip      2015