Pittsburgh Supercomputing Center 

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Prodigal

 

Prodigal (PROkaryotic DynamIc programming Genefinding ALgorithm) is an open source lightweight microbial genefinding program developed at University of Tennessee and Oak Ridge National Laboratory.

Documentation

  • http://prodigal.ornl.gov/
  • Reference: Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ, Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics11 (1):119 2010 Mar 8.

Usage

 

 

Include a command like this in your job script:

module load prodigal

The Prodigal programs are availiable through the Galaxy instance on biou.

To make the Prodigal programs availiable through the command line, csh users should enter the following command:

source /packages/bin/SETUP_BIO_SOFTWARE

To make the Prodigal programs availiable through the command line, bash users should enter the following command:

source /packages/bin/SETUP_BIO_SOFTWARE

 

See more help on Prodigal.