Pittsburgh Supercomputing Center 

Advancing the state-of-the-art in high-performance computing,
communications and data analytics.

Bedops

 

Bedops is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.

Documentation

 

Usage

  • Bridges

  • Greenfield

 

To see what other modules are needed, what commands are available and how to get additional help type

module help bedops

 

To see what versions of Bedops are available type

module avail bedops

 

To use Bedops, include a command like this in your batch script to load the Bedops module:

module load bedops

Be sure you also load any other modules needed, as listed by the module help bedops command.

 

To see what other modules are needed, what commands are available and how to get additional help type

module help bedops

 

To see what versions of Bedops are available type

module avail bedops

 

To use Bedops, include a command like this in your batch script to load the Bedops module:

module load bedops

Be sure you also load any other modules needed, as listed by the module help bedops command.