+ ulimit -c unlimited
++ pwd
+ ORIGDIR=/usr/users/0/nigra/nwgap
+ PID=23123
+ export PID
+ TMPDIR=/scratch/nigra/23123
+ export TMPDIR
+ mkdir -p /scratch/nigra/23123
+ cd /scratch/nigra/23123
+ cp /usr/users/0/nigra/nwgap/hahu.seq hahu.seq
+ cp /usr/users/0/nigra/nwgap/halua.seq halua.seq
+ srun /biomed/bin/nwgap
 Program PSC NWGAP run on ?  ?,   ?        ?


 Welcome to NWGAP global sequence alignment program. Version: 2.4
          (C)opyright 1991 Pittsburgh Supercomputing Center.


  
 NWGAP>  ECHO
 NWGAP>  TITLE Comparisons of two hemoglogin alpha chain sequences, HAHU & HALUA
  Comparisons of two hemoglogin alpha chain sequences, HAHU & HALUA
 NWGAP>  SEQUENCE QUERY=hahu.seq
  *****   Using query sequence from : hahu.seq
 NWGAP>  SEQUENCE LIBRARY=halua.seq
  *****   Using library sequence from : halua.seq
 NWGAP>  SEQUENCE RESULT=hahu_nwgap_halua_pam250.out
  *****   Writing results to : hahu_nwgap_halua_pam250.out
 NWGAP>  WIDTH=80
 NWGAP>  ALPHABET PROTEIN
  *****   Using "PROTEIN" alphabet
 NWGAP>  SCORE PAM250, GAP=-1, NEWGAP=-8
  *****   Using "PAM250" scoring scheme.
 NWGAP>  SHOW
  *****   ERROR - Invalid command. Enter "QUIT" to end the program
 NWGAP>  MATCH ALL
 Program PSC NWGAP run on ?  ?,   ?        ?
     1 alignments were found.
STOP  Nwgap statement executed
 NWGAP>  QUIT
  *****   Exiting NWGAP, one moment please. 
+ ls -la
total 20
drwxr-xr-x  2 nigra staff 4096 Jul 12 11:56 .
drwxr-xr-x  6 nigra users 4096 Jul 12 11:56 ..
-rw-r--r--  1 nigra staff 1727 Jul 12 11:56 hahu_nwgap_halua_pam250.out
-rw-r-----  1 nigra staff  220 Jul 12 11:56 hahu.seq
-rw-r-----  1 nigra staff  207 Jul 12 11:56 halua.seq
+ cp hahu_nwgap_halua_pam250.out /usr/users/0/nigra/nwgap/hahu_nwgap_halua_pam250.out
+ '[' 0 -eq 0 ']'
+ echo ' '
 
+ echo 'Successfully copied hahu_nwgap_halua_pam250.out'
Successfully copied hahu_nwgap_halua_pam250.out
+ echo ' '
 
+ cd /usr/users/0/nigra/nwgap
+ /bin/rm -rf /scratch/nigra/23123