+ ulimit -c unlimited
++ pwd
+ ORIGDIR=/usr/users/0/nigra/msa
+ PID=28025
+ export PID
+ TMPDIR=/scratch/nigra/28025
+ export TMPDIR
+ mkdir -p /scratch/nigra/28025
+ cd /scratch/nigra/28025
+ cp /usr/users/0/nigra/msa/seq.pir seq.pir
+ srun /biomed/bin/msa_10_1000 -H heur.msf -O opt.msf -b seq.pir
MSA release 2.1  (PSC revision b) started on Wed Jul 12 11:56:03 2006
Sequence file format is NBRF-PIR.
Calculating pairwise alignments.
..........
**********
Calculating epsilons.
Calculating pairwise projection costs.
..........
**********
Calculating multiple alignment.
....1....2....3....4....5....6....7....8....9....0
**************************************************
srun: error: operon03: task0: Exited with exit code 23
+ cp carp_r_5_msa_10_1000_msa250.out /usr/users/0/nigra/msa/carp_r_5_msa_10_1000_msa250.out
+ '[' 0 -eq 0 ']'
+ echo ' '
 
+ echo 'Successfully copied carp_r_5_msa_10_1000_msa250.out'
Successfully copied carp_r_5_msa_10_1000_msa250.out
+ echo ' '
 
+ cp heur.msf /usr/users/0/nigra/msa/carp_r_5_msa_10_1000_msa250_heuristic.msf
+ '[' 0 -eq 0 ']'
+ echo ' '
 
+ echo 'Successfully copied heur.msf'
Successfully copied heur.msf
+ echo ' '
 
+ cp opt.msf /usr/users/0/nigra/msa/carp_r_5_msa_10_1000_msa250_optimal.msf
+ '[' 0 -eq 0 ']'
+ echo ' '
 
+ echo 'Successfully copied opt.msf'
Successfully copied opt.msf
+ echo ' '
 
+ cd /usr/users/0/nigra/msa
+ /bin/rm -rf /scratch/nigra/28025