Sequence ID Description 1 CARP_RHICH Usr$Temp:[Ropelewski.Temp]Carp_Rhich.Sw;1 => CARP_RHI 2 CARP_YEAST Usr$Temp:[Ropelewski.Temp]Carp_Yeast.Sw;1 => CARP_YEA 3 CATD_HUMAN Usr$Temp:[Ropelewski.Temp]Catd_Human.Sw;1 => CATD_HUM 4 CHYM_BOVIN Usr$Temp:[Ropelewski.Temp]Chym_Bovin.Sw;1 => CHYM_BOV 5 PEPA_ASPAW Usr$Temp:[Ropelewski.Temp]Pepa_Aspaw.Sw;1 => PEPA_ASP *** Heuristic Multiple Alignment *** 34152 MKFTLISSCIAIAALAVAVD-AAPGEKKISIPLAKNPNYKPSAKN-AIQKAIAKYNKH---KINTSTGGIV---- ---MFSLKALLP--LALLLVSANQVAAKVHKAKIYKHELSDEMKEVTFEQHLAHLGQK-YLTQFEKANPEVVFSR MQ----PSSLLP--LALCLL-AAPASALVRIPLHKFTSIRRTMSE--VGGSVEDLIAKGPVSKYSQAVPAV---- MR------CLVV--LLAVFA-LSQGTEITRIPLYKGKSLRKALKE---HGLLEDFLQK---QQYGISSKYS---- MV-VFSKTAALV--LGLSSA-VSAAPAPTRKGFTINQIARPANKT--RTINLPGMYAR-SLAKFGGTVPQSV--K ***************24315 **********24315 *********1 ----PDAGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT--NCGSR-QTKYDPKQSSTY EHPFFTEGGHDVPLTNY-LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACFLHSKYDHEASSSY ----TEGPIPEV-LKNY-MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTY ----GFGEVASVPLTNY-LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACKNHQRFDPRKSSTF E---AASKGSAVTTPQN-NDEEYLTPVTVGKST--LHLDFDTGSADLWVFSDELP--SSEQTGHDLYTPSSSAT- 24*************23415 ****14253 ************** QADGRTWSISYGDGSSASGILAKDNVNL-----------GGLLIKGQTIELAKREAAS-FANGPNDGLLGLGFDT KANGTEFAIQYGTGS-LEGYISQDTLSI-----------GDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYDT VKNGTSFDIHYGSGS-LSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPR QNLGKPLSIHYGTGS-MQGILGYDTVTV-----------SNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYPS KLSGYTWDISYGDGSSASGDVYRDTVTV-----------GGVTTNKQAVEAASKISSEFVQNTANDGLLGLAFSS **23415 *********3421******45132 ********************234********** ITTVRGV-KTPMDNLISQGLISRPIFGVYLGK--ASNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDR ISVDKVV--PPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPV-RRKAYWEVKFEG ISVNNVL--PVFDNLMQQKLVDQNIFSFYLSR-DPDAQPGGELMLGGTDSKYYKGSLSYLNV-TRKAYWQVHLDQ LASEYSI--PVFDNMMNRHLVAQDLFSVYMD----RNGQESMLTLGAIDPSYYTGSLHWVPV-TVQQYWQFTVDS INTVQPKAQTTFFDTVKSQL-DSPLFAVQL-----KHDAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDG ***34152 *****34125 *********14253 ATVGTSTVA--SSFDGILDTGTTLLILPNNVAASVARAYGAS--DNGDGTYTISCDTSRFKP-LVFSINGASFQV IGLGDEYAE-LESHGAAIDTGTSLITLPSGLAEMINAEIGAK--KGWTGQYTLDCNTRDNLPDLIFNFNGYNFTI VEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAV--PLIQGEYMIPCEKVSTLPAITLKLGGKGYKL VTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGAT--QNQYGEFDIDCDNLSYMPTVVFEINGKMYPL YSIGDGSSS-SSGFSAIADTGTTLILLDDEIVSAYYEQVSGASGETEAGGYVFSCSTNP--PDFTVVIGDYK-AV ***************************24 SPDSLV----FEEYQGQCIAGFGYGN-FDFA-----IIGDTFLKNNYVVFNQGVPEVQIAPVAQ- GPYDYT----LEV-SGSCISAITPMD-FPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI-- SPEDYT-LKVSQAGKTLCLSGFMGMD-IPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAARL TPSAYT----SQD-QGFCTSGFQSEN-HSQK----WILGDVFIREYYSVFDRANNLVGLAKAI-- VPGKYINYAPISTGSSTCFGGIQSNSGLGLS-----ILGDVFLKSQYVVFNSEGPKLGFAAQA-- *** Optimal Multiple Alignment *** -MKFTLISSCIAIAALAVAVDAA-PGEKKISIPLAKNPNYKPSAKNA-----IQKAIAK--YNKHKINTSTGGIV --MFSLKA----LLPLALLLVSANQVAAKVHKAKIYKHELSDEMKEVTFEQHLAHLGQK-YLTQFEKANPEVVFS ---MQPSS----LLPLALCLLAA-PASALVRIPLHKFTSIRRTMSEVGGS--VEDLIAKGPVSKYSQAVPAVT-- -----MRC----LVVLLAVFALS-QGTEITRIPLYKGKSLRKALKEHGL---LEDFLQK---QQYGISSKYSGF- MVVFSKTA----ALVLGLSSAVS-AAPAPTRKGFTINQIARPANKTRTIN--LPGMYAR-SLAKFGGTVPQSVKE PD-----AGVGTVPMTDYGNDVEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT--NCGSR-QTKYDPKQSST REHPFFTEGGHDVPLTNY-LNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACFLHSKYDHEASSS -------EGPIPEVLKNY-MDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSST -------GEVASVPLTNY-LDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACKNHQRFDPRKSST AA-----SKGSAVTTPQN-NDEEYLTPVTVGKST--LHLDFDTGSADLWVFSDELP--SSEQTGHDLYTPSSSAT YQADGRTWSISYGDGSSASGILAKDNVNL-----------GGLLIKGQTIELAKREAA-SFANGPNDGLLGLGFD YKANGTEFAIQYGTGS-LEGYISQDTLSI-----------GDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGYD YVKNGTSFDIHYGSGS-LSGYLSQDTVSVPCQSASSASALGGVKVERQVFGEATKQPGITFIAAKFDGILGMAYP FQNLGKPLSIHYGTGS-MQGILGYDTVTV-----------SNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMAYP -KLSGYTWDISYGDGSSASGDVYRDTVTV-----------GGVTTNKQAVEAASKISSEFVQNTANDGLLGLAFS TITTVRGV-KTPMDNLISQGLISRPIFGVYLGKASN--GGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVD TISVDKVV--PPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPV-RRKAYWEVKFE RISVNNVL--PVFDNLMQQKLVDQNIFSFYLSRDPD-AQPGGELMLGGTDSKYYKGSLSYLNV-TRKAYWQVHLD SLASEYSI--PVFDNMMNRHLVAQDLFSVYMDRNGQ----ESMLTLGAIDPSYYTGSLHWVPV-TVQQYWQFTVD SINTVQPKAQTTFFDTVKSQL-DSPLFAVQLKHDAP-----GVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTD RATVGTSTVA--SSFDGILDTGTTLLILPNNVAASVARAYGASDNGD--GTYTISCDTSRFKP-LVFSINGASFQ GIGLGDEYAE-LESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWT--GQYTLDCNTRDNLPDLIFNFNGYNFT QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQ--GEYMIPCEKVSTLPAITLKLGGKGYK SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQY--GEFDIDCDNLSYMPTVVFEINGKMYP GYSIGDGSSS-SSGFSAIADTGTTLILLDDEIVSAYYEQVSGASGETEAGGYVFSCSTNP--PDFTVVIGDYK-A VSPDSLVF----EEYQGQCIAGF-----GYGNFDFAIIGDTFLKNNYVVFNQGVPEVQIAPVAQ- IGPYDYTL-----EVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI-- LSPEDYTL-KVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAARL LTPSAYTS-----QDQGFCTSGFQ----SENHSQKWILGDVFIREYYSVFDRANNLVGLAKAI-- VVPGKYINYAPISTGSSTCFGGIQ----SNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA-- End gaps not penalized. Costfile: pam250 Alignment cost: 63091 Lower bound: 62571 Delta: 520 Max. Delta: 752 Sequences Proj. Cost Pair. Cost Epsilon Max. Epsi. 1 2 6343 6263 80 106 1 3 6473 6409 64 61 1 4 6103 6066 37 12 1 5 6343 6220 123 151 2 3 6231 6193 38 84 2 4 6085 6054 31 77 2 5 6509 6466 43 74 3 4 5970 5950 20 22 3 5 6656 6616 40 79 4 5 6378 6334 44 86 Elapsed time = 435.503