Examples of MSA for the Opterons

MSA is a global multiple sequence alignment program that aligns several protein or nucleic acid sequences.

Example files include:

• msa.job, the script file.
• seq.pir, Sequence file containing five aspartyl proteases, input.
• carp_r_5_msa_10_1000_msa250_heuristic.msf, the heuristic alignment in GCG MSFformat, output.
• carp_r_5_msa_10_1000_msa250_optimal.msf, The optimal alignment in GCG MSF format, output.
• carp_r_5_msa_10_1000_msa250.out, the output from the MSA program.
• msa.out, standard out and error.