Examples for MAXSEGS for the Opteron Cluster

MAXSEGS is an optimal local sequence alignment program that will find the N-best alignments between two nucleic acid sequences or two protein sequences.

Example files include:

• f1-k_maxsegs_plbo_pam40.job, the job script which finds alignments between F1-k Kringle fragment and bovine prothrombine.
• f1k.nbrf, F1-k Kringle fragment in the NBRF database format , input.
• plbo.nbrf, Bovine prothrombine in the NBRF database format, input.
• f1-k_maxsegs_plbo_pam40.lst, the list file from the run.
• f1-k_maxsegs_plbo_pam40.out, the alignments from the run .
• maxsegs.out, standard out and error.