RSS Feed MAXSEGS
MAXSEGS is an optimal local sequence alignment program that will find the N-best alignments between two nucleic acid sequences or two protein sequences. MAXSEGS uses the version of the dynamic programming algorithm developed by Michael Waterman and Mark Eggert.
MAXSEGS accepts input in a wide variety of formats, including NBRF-PIR, GenBank, and EMBL.
Installed on the Opteron Cluster.
Opteron cluster version 3.6:
It is convenient to use /biomed/lib/examples/.login.fixed for this and other sequence analysis packages.
Usage:
/biomed/bin/maxsegs
Other MAXSEGS documentation:
- Sequence analysis tutorials developed at PSC.
- User Manual for MAXSEGS version 3.5
- User Manual for version 3.4 of MAXSEGS.
See also:
- Other nucleic acid and protein sequence analysis packages installed at the PSC.