NAME
SYNOPSIS hmme [options] hmmfile DESCRIPTION hmme creates a set of likely sequences, according to the statistics of a given HMM. This is sometimes useful for comparing different HMMs, or just spot-checking that an HMM contains reasonable numbers (i.e., a globin HMM should produce sequences that look like globins).
By default, hmme produces 10 likely sequences and prints them to stdout in a multiple alignment format. There are options for changing the number of sequences or the format.
OPTIONS
SEE ALSO
Overview page: hmmer(l)
Individual man pages: hmma(l), hmmb(l), hmmfs(l), hmmls(l), hmms(l), hmmsw(l), hmmt(l), hmm-convert(l)
User guide and tutorial: Userguide.ps
BUGS No major bugs known.
Not very tolerant of errors on the command line.
NOTES
This software and documentation is Copyright (C) 1992-1995, Sean R. Eddy. It is freely distributable under terms of the GNU General Public License. See COPYING, in the source code distribution, for more details, or contact me.
Sean Eddy Dept. of Genetics, Washington Univ. School of Medicine 660 S. Euclid Box 8232 St Louis, MO 63110 USA Phone: 1-314-362-7666 FAX : 1-314-362-2985 Email: eddy@genetics.wustl.edu