File formats

• Sequence files
  • Single sequence formats
  • Multiple unaligned sequences (databases)
  • Alignments
  • Warnings
  • FASTA unaligned sequence format
    • Example of a simple FASTA file
  • SELEX alignment format
    • Example of a simple SELEX format file
    • Detailed specification of a SELEX file
    • Optional annotation
    • Secondary structure
    • Reference coordinate system
    • Sequence header
    • Author
    • An example SELEX file with annotation
• Prior files