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References
- 1
-
Stephen F. Altschul.
Amino acid substitution matrices from an information theoretic
perspective.
J. Mol. Biol., 219:555--565, 1991.
- 2
-
Stephen F. Altschul, Warren Gish, Webb Miller, Eugene W. Myers, and David J.
Lipman.
Basic local alignment search tool.
J. Mol. Biol., 215:403--410, 1990.
- 3
-
Geoffrey J. Barton.
Protein multiple sequence alignment and flexible pattern matching.
Meth. Enzymol., 183:403--427, 1990.
- 4
-
Donald Bashford, Cyrus Chothia, and Arthur M. Lesk.
Determinants of a protein fold: Unique features of the globin amino
acid sequences.
J. Mol. Biol., 196:199--216, 1987.
- 5
-
Sean R. Eddy, Graeme Mitchison, and Richard Durbin.
Maximum discrimination hidden Markov models of sequence consensus.
J. Comput. Biol., in press, 1995.
- 6
-
Michael Gribskov, Roland Luthy, and David Eisenberg.
Profile analysis.
Meth. Enzymol., 183:146--159, 1990.
- 7
-
Michael Gribskov, Andrew D. McLachlan, and David Eisenberg.
Profile analysis: Detection of distantly related proteins.
Proc. Natl. Acad. Sci. USA, 84:4355--4358, 1987.
- 8
-
Samuel Karlin and Stephen F. Altschul.
Methods for assessing the statistical significance of molecular
sequence features by using general scoring schemes.
Proc. Natl. Acad. Sci. USA, 87:2264--2268, 1990.
- 9
-
D.A.M. Konings and P. Hogeweg.
Pattern analysis of RNA secondary structure: Similarity and
consensus of minimal-energy folding.
J. Mol. Biol., 207:597--614, 1989.
- 10
-
Anders Krogh, Michael Brown, I. Saira Mian, Kimmen Sjolander, and David
Haussler.
Hidden Markov models in computational biology: Applications to
protein modeling.
J. Mol. Biol., 235:1501--1531, 1994.
- 11
-
S.B. Needleman and C.D. Wunsch.
A general method applicable to the search for similarities in the
amino acid sequence of two proteins.
J. Mol. Biol., 48:443--453, 1970.
- 12
-
W.R. Pearson and D.J. Lipman.
Improved tools for biological sequence comparison.
Proc. Natl. Acad. Sci. USA, 85:2444--2448, 1988.
- 13
-
Lawrence R. Rabiner.
A tutorial on hidden Markov models and selected applications in
speech recognition.
Proc. IEEE, 77:257--286, 1989.
- 14
-
D. Schneider, C. Tuerk, and L. Gold.
Selection of high affinity RNA ligands to the bacteriophage R17
coat protein.
J. Mol. Biol., 228:862--869, 1992.
- 15
-
T.F. Smith and M.S. Waterman.
Identification of common molecular subsequences.
J. Mol. Biol., 147:195--197, 1981.
- 16
-
Collin M. Stultz, James V. White, and Temple F. Smith.
Structural analysis based on state-space modeling.
Protein Sci., 2:305--314, 1993.
- 17
-
William Ramsay Taylor.
Identification of protein sequence homology by consensus template
alignment.
J. Mol. Biol., 188:233--258, 1986.
- 18
-
Craig Tuerk and Larry Gold.
Systematic evolution of ligands by exponential enrichment.
Science, 249:505--510, 1990.
Sean Eddy
Mon Apr 17 09:54:19 CDT 1995