Generating the membrane systems (CHARMM input files)
 

A. DOPC bilayer

Input files:
top_all27_lipid.rtf       (The lipid topology file)
par_all27_lipid.prm     (the lipid parameter file)
dopc_1500ps.pdb          (coordinates from previous simulation)

gen_dopc_bilayer.inp   (Creates the psf and coordinate file,
                                       creates images and calculates energy)

B. DPPC bilayer

Input files:
top_all27_lipid.rtf        (The lipid topology file)
par_all27_lipid.prm      (the lipid parameter file)
dppc_feller_feb99.crd   (coordinates from previous simulation)

gen_dppc_bilayer.inp    (Creates the psf and coordinate file,
                                        creates images and calculates energy)

C. SDS micelle

Input files:
dyn_mic4_box_120ps.crd     (coordinates from previous simulation)

gen_micelle_1.inp         (Creates the psf and coordinate file,
                                         creates images and calculates energy)