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VCFtools

VCFtools provides easily accessible methods for working with complex genetic variation data in the form of VCF files.

Documentation

Usage on Bridges-2

To see what versions of VCFTools are available and if there is more than one, which is the default, along with some help, type

module spider vcftools

To use VCFTools, include a command like this in your batch script or interactive session to load the VCFTools module: (note ‘module load’ is case-sensitive):

module load vcftools

Usage

To see what versions of VCFTools are available type

module avail vcftools

To see what other modules are needed, what commands are available and how to get additional help type

module help  vcftools

To use VCFTools, include a command like this in your batch script or interactive session to load the VCFTools module:

module load vcftools